Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22480 827 / 0 PFK5 phosphofructokinase 5 (.1) AT4G26270 385 / 4e-129 PFK3 phosphofructokinase 3 (.1) AT5G56630 382 / 5e-128 PFK7 phosphofructokinase 7 (.1) AT4G29220 378 / 2e-126 PFK1 phosphofructokinase 1 (.1) AT5G61580 378 / 2e-125 PFK4 phosphofructokinase 4 (.1.2) AT4G32840 374 / 3e-125 PFK6 phosphofructokinase 6 (.1) AT5G47810 329 / 7e-108 PFK2 phosphofructokinase 2 (.1) AT4G04040 65 / 7e-11 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G12000 64 / 1e-10 Phosphofructokinase family protein (.1) AT1G20950 52 / 9e-07 Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012738 [exp] 998 / 0 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10005488 [exp] 385 / 1e-128 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 381 / 7e-128 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 382 / 1e-126 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 379 / 3e-126 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 383 / 2e-125 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 348 / 8e-115 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10039993 [exp] 142 / 6e-40 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10037972 [exp] 61 / 2e-09 AT4G04040 498 / 9e-173 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010300 [exp] 840 / 0 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.018G069200 [exp] 381 / 3e-127 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 380 / 6e-127 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.006G152600 [exp] 382 / 7e-127 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.016G002700 [exp] 360 / 2e-119 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G235066 [exp] 181 / 9e-54 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.006G235132 [exp] 175 / 2e-51 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.001G079501 [exp] 116 / 5e-30 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.011G015900 [exp] 62 / 5e-10 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.006G281900 [exp] 62 / 5e-10 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00365 [flax] [poplar] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Lus10002648 pacid=23168796 polypeptide=Lus10002648 locus=Lus10002648.g ID=Lus10002648.BGIv1.0 annot-version=v1.0 ATGGATACTCCTCTCACCTCCCGTACTGCCATTACTAACCCCAGGAGGAGGACGCTCTCTTCTTCCTCTTCTCTTCTGTTTCCTCGATCACGCAGCCGTA CCAATGCCTTCGTCCCTTTCACGCCCCCCGGCGCCGGGAATCTTAGCAGAATCGTTGGAGTGCGTGCCGAGATTGGTAAGCGGACTGCTCCTGCTGTTGA TTTCAGTGATCCGGAGTGGAAGATCAAGTACCAGAAGGACTTCGAGCTGCGCTTCAGTATTCCGCATATCACTGATGTATTCCCCGATGCTGAGCCGATT CCTTCTACTTTTTGTCTGCGGATGAGGACTCCGGTGTCCGAGGATTTTGCAGGTGTTTATCCGTCTGACGAGGAATGGCAGGGATATATTAATAATAATG ATCGGGTGCTTCTTAAGACCATAAATTTTGCATCGCCCTCCTCTGCTGGAGCAGTATGCATTGACCCAAACTGTACCTGGGTTGAACAATGGGTTCACCG TGCTGGACCTAGAGAGAAGATTTACTTCAAACCTGACGAAGTAAAGGCGGGAATTGTTACTTGTGGCGGATTGTGTCCTGGTCTCAATGATGTCATCAGA CAGGTTGTTATTACACTTGAAATATATGGTGTCAAAAGCATTGTGGGGATTCCTTTTGGTTATCGTGGATTTTCTGACAAAGACTTGAGTGAAATGCCAC TATCAAGGAAAGTGGTCCAAAATATCCATCTTTCCGGTGGAAGTTTGTTAGGGGTATCACGTGGAGGCCCCAGCGTCAGTGATATTGTTGATAGCATGCA GGAAAGGGAAATCAACATGCTCTTTGTACTAGGTGGGAATGGCACGCATGCCGGGGCCAATGCTATACACGAAGAGTGTCGTAGAAGGAATCTCAAGGTG GCCGTCGTTGGGGTACCAAAAACAATAGATAATGACATCTTATTGATGGATAAAACTTTTGGTTTTGACACTGCCGTAGAAGAAGCACAGCGAGCAATAA ACTCTGCCTACATCGAGGCGCACAGTGCTTATCATGGAGTTGGCATTGTGAAATTAATGGGACGTGACAGTGGGTTTATAGCAATGCACGCATCACTAGC TAGTGGACAGATTGATATTTGCTTGATCCCAGAGGTACCTTTTCAATTACATGGACCTCATGGTGTCTTGACACACCTCAAATATTTGATCGAGACAAAG GGATCAGCTGTCCTCTGTGTGGCAGAGGGAGCTGGGCAGAACTTGCTTCAGAAAACCAATGCTAAGGATGCATCCGGGAATGTTGTATTCGGAGACATCG GTGTACACATCCAACAAGAGACCAAGAAATATTTCAGGGAGATTGGCGTCCATGCCGATGTGAAGTACATTGATCCGACATATATGATCCGTGCGTGCCG TGCAAATGCATCAGACGGAATATTATGTGCTGTTCTTGGACAGAATGCGGTCCATGGTGCATTTGCAGGATACAGTGGGATTACAGTAGGGATATGTAAC ACACACTATGTCTACTTCCCGATCCCAGAAGTGATCGCTTACCCGAGACCCGTAGATCCCAACAGCCGGATGTGGCATCGTTGCTTGACTTCGACAGGGC AACCCGACTTCATCTAA
AA sequence Show only first row Show all	>Lus10002648 pacid=23168796 polypeptide=Lus10002648 locus=Lus10002648.g ID=Lus10002648.BGIv1.0 annot-version=v1.0 MDTPLTSRTAITNPRRRTLSSSSSLLFPRSRSRTNAFVPFTPPGAGNLSRIVGVRAEIGKRTAPAVDFSDPEWKIKYQKDFELRFSIPHITDVFPDAEPI PSTFCLRMRTPVSEDFAGVYPSDEEWQGYINNNDRVLLKTINFASPSSAGAVCIDPNCTWVEQWVHRAGPREKIYFKPDEVKAGIVTCGGLCPGLNDVIR QVVITLEIYGVKSIVGIPFGYRGFSDKDLSEMPLSRKVVQNIHLSGGSLLGVSRGGPSVSDIVDSMQEREINMLFVLGGNGTHAGANAIHEECRRRNLKV AVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGVGIVKLMGRDSGFIAMHASLASGQIDICLIPEVPFQLHGPHGVLTHLKYLIETK GSAVLCVAEGAGQNLLQKTNAKDASGNVVFGDIGVHIQQETKKYFREIGVHADVKYIDPTYMIRACRANASDGILCAVLGQNAVHGAFAGYSGITVGICN THYVYFPIPEVIAYPRPVDPNSRMWHRCLTSTGQPDFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10002648 [exp]	0	1
AT1G47380			Protein phosphatase 2C family ...		Lus10021737 [exp]	5.1	0.7694
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10035126 [exp]	10.7	0.7151
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	11.7	0.7304
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	24.3	0.6931
AT5G35570			O-fucosyltransferase family pr...		Lus10017171 [exp]	26.2	0.6985
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10037617 [exp]	27.5	0.7200
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Lus10013189 [exp]	31.7	0.6932
AT5G09890			Protein kinase family protein ...		Lus10005707 [exp]	34.2	0.6950
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10005034 [exp]	40.2	0.6282
AT1G67390			F-box family protein (.1)		Lus10029083 [exp]	40.2	0.6600

Compare expression of checked genes

Lus10002648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.