Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38070 64 / 2e-12 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68810 52 / 2e-08 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41130 47 / 7e-07 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 47 / 1e-06 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT3G56770 43 / 3e-05 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012737 [exp] 228 / 6e-76 AT4G38070 95 / 2e-21 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 56 / 1e-09 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10034271 [exp] 53 / 1e-08 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042017 [exp] 50 / 1e-07 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018020 [exp] 46 / 2e-06 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10035056 [exp] 45 / 1e-05 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021711 [exp] 44 / 1e-05 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010500 [exp] 108 / 5e-30 AT4G38070 149 / 5e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G105300 [exp] 50 / 1e-07 AT3G56770 110 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G055700 [exp] 49 / 3e-07 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G116000 [exp] 48 / 5e-07 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 44 / 9e-06 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037100 [exp] 44 / 2e-05 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002649 pacid=23168788 polypeptide=Lus10002649 locus=Lus10002649.g ID=Lus10002649.BGIv1.0 annot-version=v1.0 ATGATCCTCCCTACCTTGGTAAAAAAGAACAAAGCATCGGTGCTTCACGAGACAATCCGACAAGTGAGGCGGATGAATTCAGCAGCATCAGCACTCAATG CAATATGCGGAGGTGGGTCGGACTGCCTATATCCCGGAGGGGATGACCACATAAAGGTAGAGGACAACGTCGACAAAGGGAAAGGCATCAATCGGCTTGT AAAGGTTACGGTGAGCTGCAATGAGAGAAGCGAGCTACTGGTGGATATTGGGAAGGCAGCAAGGTCAGTGAAGGCGAAGGTGGTGAGAGCAGAGATGGTT ACGGTAGGTGGGAGGACCAAGTGTGTGTTTTGGGTTAAAGGGGTGGATGGGTTTGAAGGGAGGAGGATGCTTAGCATGGCTGTCAATGCTGCTGCCCGAG GCTGCAATAAGACTGTTACTTGCAAAGCAAGGAACCGCCTTGGCGAGTACGTAGGTAGGTCTAACTGGTAA
AA sequence Show only first row Show all	>Lus10002649 pacid=23168788 polypeptide=Lus10002649 locus=Lus10002649.g ID=Lus10002649.BGIv1.0 annot-version=v1.0 MILPTLVKKNKASVLHETIRQVRRMNSAASALNAICGGGSDCLYPGGDDHIKVEDNVDKGKGINRLVKVTVSCNERSELLVDIGKAARSVKAKVVRAEMV TVGGRTKCVFWVKGVDGFEGRRMLSMAVNAAARGCNKTVTCKARNRLGEYVGRSNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10002649 [exp]	0	1
					Lus10043270 [exp]	3.5	0.8708
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Lus10011328 [exp]	4.1	0.8773
					Lus10007667 [exp]	7.1	0.8681
AT1G04985			unknown protein		Lus10015157 [exp]	8.5	0.8673
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040538 [exp]	8.8	0.8763
AT2G04940			scramblase-related (.1)		Lus10010075 [exp]	11.0	0.8137
AT1G11410			S-locus lectin protein kinase ...		Lus10005053 [exp]	13.2	0.8065
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10041420 [exp]	19.9	0.8320
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012632 [exp]	24.3	0.8693
AT1G10890			unknown protein		Lus10043141 [exp]	24.7	0.8324

Compare expression of checked genes

Lus10002649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.