Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01710 108 / 4e-28 Chaperone DnaJ-domain superfamily protein (.1) AT5G09540 91 / 5e-22 Chaperone DnaJ-domain superfamily protein (.1) AT5G64360 87 / 9e-20 EIP9 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) AT1G62970 66 / 2e-12 Chaperone DnaJ-domain superfamily protein (.1) AT2G05230 56 / 6e-09 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 56 / 6e-09 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 45 / 2e-05 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT5G35753 44 / 6e-05 Domain of unknown function (DUF3444) (.1) AT2G25560 43 / 0.0001 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012736 [exp] 329 / 2e-114 AT2G01710 134 / 8e-37 Chaperone DnaJ-domain superfamily protein (.1) Lus10009275 [exp] 71 / 3e-14 AT2G01710 300 / 2e-100 Chaperone DnaJ-domain superfamily protein (.1) Lus10015891 [exp] 69 / 2e-13 AT2G01710 310 / 2e-104 Chaperone DnaJ-domain superfamily protein (.1) Lus10037698 [exp] 69 / 2e-13 AT5G64360 184 / 9e-51 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10015692 [exp] 67 / 7e-13 AT5G64360 179 / 5e-50 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10001726 [exp] 63 / 2e-11 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10027316 [exp] 62 / 7e-11 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 59 / 6e-10 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006380 [exp] 59 / 8e-10 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105500 [exp] 115 / 1e-30 AT2G01710 308 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G156100 [exp] 114 / 7e-30 AT2G01710 313 / 9e-106 Chaperone DnaJ-domain superfamily protein (.1) Potri.017G044600 [exp] 70 / 1e-13 AT5G64360 189 / 3e-53 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Potri.007G114800 [exp] 66 / 2e-12 AT5G09540 155 / 9e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G029500 [exp] 62 / 5e-11 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 61 / 1e-10 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 59 / 6e-10 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196201 [exp] 58 / 6e-10 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.010G018800 [exp] 57 / 1e-09 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 56 / 7e-09 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002650 pacid=23168806 polypeptide=Lus10002650 locus=Lus10002650.g ID=Lus10002650.BGIv1.0 annot-version=v1.0 ATGGAGCCCAGTCACGACTATGAAACCCTACTACGTTTCGCCTCCCAACTTCTCCGCATCCGCGACTTCATCGGCGCCAGAGACCACGCCCTCGAAGCCC AGAAATTCAACCCTAACCGACCGGAGCCTCAACAGGTCATCGCCATTTCCGACGTCCTCCTCGCCGCCTCCGACGACTGGGCTTCCGTGCTCCAGCTGAA GACCCCGGTCGCCGTCCCCTACCGTGCATGCATTAGAAGCCAGTTCACCAAGCTCGTTGCGCTAGTTCAGCCTTCCAGAAACCGATTCCCCTTCAGCGAA GAGGCGTTCGACCGCGTCTTCTCGGCTATGAAATCGGGCGAGAAATTGAAGGAAGGAGGAGATGATAAATCTCCTTCTTCTTCGACGTTTTGGACGGTTT GCCCTTACTGCTACTACGAGCACGAGTACTGGATTGAGTACGAGGATTGCTGCCTCCGGTGCCAGAATTTCCGGAGAGGATTCCACGGGGTCGCGGTGGC GCTGCCTCCTCCGGCGACGGTTGAAGGCGGCTCCTCGAAGGAGGAGTATTACTGTGGCCATGGGAAAAGGAAATGGATGAAGTTTAGTGTACAGTTTGTT CATCCTCTCCCTTTTTTGTTGTTATGTCCTCAGTACTCAAATGTTAATGCAGAAAGGAAAATGGAATAG
AA sequence Show only first row Show all	>Lus10002650 pacid=23168806 polypeptide=Lus10002650 locus=Lus10002650.g ID=Lus10002650.BGIv1.0 annot-version=v1.0 MEPSHDYETLLRFASQLLRIRDFIGARDHALEAQKFNPNRPEPQQVIAISDVLLAASDDWASVLQLKTPVAVPYRACIRSQFTKLVALVQPSRNRFPFSE EAFDRVFSAMKSGEKLKEGGDDKSPSSSTFWTVCPYCYYEHEYWIEYEDCCLRCQNFRRGFHGVAVALPPPATVEGGSSKEEYYCGHGKRKWMKFSVQFV HPLPFLLLCPQYSNVNAERKME

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10002650 [exp]	0	1
AT2G28940			Protein kinase superfamily pro...		Lus10040804 [exp]	5.4	0.7018
					Lus10024547 [exp]	7.7	0.6862
					Lus10021186 [exp]	17.3	0.6742
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	19.4	0.6854
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10036136 [exp]	34.4	0.6771
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	36.9	0.6729
AT4G35370			Transducin/WD40 repeat-like su...		Lus10004613 [exp]	38.4	0.6418
AT1G71390		AtRLP11	receptor like protein 11 (.1)		Lus10016401 [exp]	39.1	0.6553
AT1G69550			disease resistance protein (TI...		Lus10018308 [exp]	41.5	0.6461
AT2G28940			Protein kinase superfamily pro...		Lus10016536 [exp]	44.8	0.6677

Compare expression of checked genes

Lus10002650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.