Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37530 606 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G55130 48 / 1e-05 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012735 [exp] 758 / 0 AT5G37530 661 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000697 [exp] 44 / 0.0003 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022510 [exp] 43 / 0.0005 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G083200 [exp] 645 / 0 AT5G37530 646 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G096300 [exp] 49 / 5e-06 AT1G05350 571 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G355800 [exp] 45 / 9e-05 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family
Representative CDS sequence Show only first row Show all	>Lus10002651 pacid=23168792 polypeptide=Lus10002651 locus=Lus10002651.g ID=Lus10002651.BGIv1.0 annot-version=v1.0 ATGGAGCAGAGAGTAAAATGTTTGGCATTGCTGGGAGCAGGGGTTGCTCTCGGCTCTACGTCCACCTACCTCCTGCTCAAGCTTCTTTCCAGAAAGAGTT CTACACCAAGGAAGAATGTTGGATTGAACGGTAACTCCATTGTGCCTGAGGATTCTGTGAAATGCTCCTCTTCAGATAGATGTCATGGGATGTCAGGTTC AGACCTCTTAAAGGATGACATAGTTTCTGAACAACTTACCAGGAACATTCAGTTCTTTGGTTTCGAATCCCAGGAGAAGGTGACGGCCTCCTATGTTGTC GTCATTGGTCTAGGAGGTGTTGGAAGTCACGCTGCTTCTATGCTTTTGAGGTCGGGAGTTGGAAGGCTCCTCTTAGTAGACTTTGACCAGGTTTCTGTTT CATCCTTAAACCGACATGCTGTGGCGACACGAGAAGATGTTGGCATACCGAAAGCGGAGTGCTTGAAGAAGCACTTTTCAGTCATCTTCCCAGAGTGCCG TGTCGAAGCCAAAGTGCTTCTGTATGATGAATCATCTGAAGAAGAGATCCTATCAGGCCATCCGGATTTCGTGTTGGACTGCATTGATAACATTGACACA AAGGTGGCGCTTCTAGCTGCGTGTACTCGTAGGAATTTGAAGGTTCTATCTGCAACAGGAGCTGGTGCTAGGGCTGACCCATCTAGGATCAGAGTGGCTG ACTTAAGAGAGTCAACAAATGATCCATTGTCCAGAGCTGTGAGACATCGTTTAAGGAAGTATCATGGCATAGAGGGGGGGATACCTGTGGTCTTCTCTCT GGAAAAGCCAAAAGCCAAGCTGCTTCCTTTCAAGGGACCAAGTGGAGAAGAAGAGAATCCTTCTGATTATCAGATAGTACCGGGATTCAGGGTGCGAATA ATTCCTGTTTTAGGTACCATCCCTGCAATCTTCGGACAGGTGATGGCCTCCTACGTTGTGACCCAACTTGCCGGGTTTCAAGTGGAAATGGAGCCTGTGG TCAATTTGGACACAGATCATTACCAAATGCTTCACCAACGCCTTATCGAGCATGAGGAATCCCTGTATGGCACAGCCGTTGAGGTTGAGGTGGATGTCGA GGAAGTCAAATATGTCGTAAAAGAACTATGGCATGGACGGAGTGCCCGGGATCAGTTTGTGAAAGATGTCGGACGAGGAATGTGGCGAGCAATTAATGAA TTAATGCTTGTGAGGTGGGACGCAGAGAAGCCAGCTTCTGTGTCAAATCTCATCCTTCTCAAGTTTACAGAGGCTGATGAACACGAATCGAGAACATTGG ACGAAATCAAGCAGGAGGAACCGGAGTTCTTCCAGAGGGTCACGGCTGCCCTGAACCGAGCACAAGTCGAGTTTGGCTCAGTTTTATGTTCTTCCGTGGA AGAGGAAAGCAACCATGGCTCGGGGAGGGCATCTGAAGTTGAGTTTGGGGAGTACATATTCTCTCCCACTAAGTGTAGGGTGAGAGTGTTAGCAAAGTTG CAGGGAAAATTGTTAGTTAGAGCGTAA
AA sequence Show only first row Show all	>Lus10002651 pacid=23168792 polypeptide=Lus10002651 locus=Lus10002651.g ID=Lus10002651.BGIv1.0 annot-version=v1.0 MEQRVKCLALLGAGVALGSTSTYLLLKLLSRKSSTPRKNVGLNGNSIVPEDSVKCSSSDRCHGMSGSDLLKDDIVSEQLTRNIQFFGFESQEKVTASYVV VIGLGGVGSHAASMLLRSGVGRLLLVDFDQVSVSSLNRHAVATREDVGIPKAECLKKHFSVIFPECRVEAKVLLYDESSEEEILSGHPDFVLDCIDNIDT KVALLAACTRRNLKVLSATGAGARADPSRIRVADLRESTNDPLSRAVRHRLRKYHGIEGGIPVVFSLEKPKAKLLPFKGPSGEEENPSDYQIVPGFRVRI IPVLGTIPAIFGQVMASYVVTQLAGFQVEMEPVVNLDTDHYQMLHQRLIEHEESLYGTAVEVEVDVEEVKYVVKELWHGRSARDQFVKDVGRGMWRAINE LMLVRWDAEKPASVSNLILLKFTEADEHESRTLDEIKQEEPEFFQRVTAALNRAQVEFGSVLCSSVEEESNHGSGRASEVEFGEYIFSPTKCRVRVLAKL QGKLLVRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10002651 [exp]	0	1
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031761 [exp]	1.4	0.9622
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	2.0	0.9563
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10027503 [exp]	5.0	0.9494
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	5.2	0.9356
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	8.0	0.9524
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	8.5	0.9533
AT3G12390			Nascent polypeptide-associated...		Lus10024109 [exp]	9.2	0.9323
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10022551 [exp]	9.4	0.9393
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10022832 [exp]	10.4	0.9428
AT3G59670			unknown protein		Lus10008349 [exp]	10.6	0.9292

Compare expression of checked genes

Lus10002651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.