Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10490 736 / 0 MSL2 MSCS-like 2 (.1.2.3) AT1G58200 630 / 0 MSL3 MSCS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012733 [exp] 1032 / 0 AT1G58200 630 / 0.0 MSCS-like 3 (.1.2) Lus10009277 [exp] 639 / 0 AT1G58200 710 / 0.0 MSCS-like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011100 [exp] 765 / 0 AT5G10490 714 / 0.0 MSCS-like 2 (.1.2.3) Potri.002G105900 [exp] 716 / 0 AT1G58200 729 / 0.0 MSCS-like 3 (.1.2) Potri.005G154000 [exp] 704 / 0 AT1G58200 734 / 0.0 MSCS-like 3 (.1.2) Potri.005G107200 [exp] 57 / 4e-10 AT5G10490 77 / 2e-18 MSCS-like 2 (.1.2.3) Potri.014G088200 [exp] 50 / 3e-06 AT4G00290 580 / 0.0 Mechanosensitive ion channel protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10002652 pacid=23168809 polypeptide=Lus10002652 locus=Lus10002652.g ID=Lus10002652.BGIv1.0 annot-version=v1.0 ATGCCTGGGGCTGGTTCCTTGCTATTGTCTCATGATTTGGGACTTTGCAAGAGCCAGAGCCGTAGGCAATTTAAGGATACTCTAGGAAGGAGCAATCTAC CTTCTTCAACTCCTGGGCTGTCTTCATGCGTTTTGATAGTTGAACAGGAGAACAGTCTTGTATTCTTTTATGTACTTTTGTACGAGCATTTGAAGCTTTG GAATTTTCTTGCTGGTATTCCGCAATGTGCAATGTTGCATGGACGGGACTCTTGGACTCTCCCTATGTTGGGAACTTCTTACAAGTCCACATACAATGCA CCACATATCAGTAATACTTTCCGGTGCCATTCTTTTTTGGGACCAGGTCAAGCCCTTGAAGTTCCTGCCATAAAGGCCGCTTCAGGAGCTTTCACGAGGG CATATAACAATCTACAAGCTAGTCCTCTTGTACTCAGGATAGCTCCAGCTGTAGGTATTATTGTGTTCACTTTATGGGGTCTTGCACCACTTATGCGTCA GATCCGAAACCTTATACTCCGTAAAAATGATAATGGTTGGAAGAAGAGTAACACTTACCATATTACAACCTCCTACCTTCGGCCTTTGCTGCTGTGGGCA GGTGTAATATTTATATGCAGGTCACTGGATCCTGTTGTTCTTCCGACAGAAGCTGGTCAGATTGTCAAGCAGAGGCTTCTCAATTTTGTACAGTCATTGT CAACTGTCCTGGCTTTTGCGTATAGCTTGTCACGCCTGATTCAACACTCGCAGAGATTCTTTATGGAGCCCAATGAAATCAACGATCCAAGAAATATGGG GCTAGACTTTGTTGGGAAGGCTGTATACTCCTCGGTATGGGTAGCTGCTTTTTCACTCTTCATGGAGTTGTTGGGTTTCTCTACCCATAAATGGCTTACT GCTGGAGGTCTCGGGACGGTATTGCTGACTCTTGCTGGACGTGAGATATTTACAAATTTTCTCTCAAGTGCAATGATTCATGCTACTAGGCCTTTTGTTG TAAATGAGTGGATTCAGACGAAAATTGAAGGCTACGAAGTTTCTGGCACTGTAGAGCATGTGGGTTGGTGGTCGCCTACAGTCATAAGAGGTGAAGATCG TGAAGCAGTTCATATACCGAACCATAAGTTTACAATGAATGTTGTGAGAAATCTCACTCAGAAAAGTCATTGGAGAATTAAAACACATCTGGCAATTAGC CACTTGGATGTCAATAAAATCAATACAATTGTTGCTGATATGCGCAAAGTGTTAGCTAAGAATCCTCAGGTTGAACAGCAAAGATTGCACAGAAGAGTCT TTTTAGAGAATGTCAATCCTGAAAATCAAGCTCTCATGATATTGATATCATGCTTCGTAAAGACCTCACACATTCAAGAATATCTTTGTGTAAAGGAAGC TATTCTGCTGGATCTTCTACGAGTCATCAGCCATCACCGCGCTCGTCTGGCTACACCAATACGTACAGTGCAGAAGATCTACACTGATGCTGATTATGAC AATATTCCATTTGAAGAACCGAACTTTAACAGGGGCGGCGTTGCATCTAATCGCCCTTTGCTACTGATTGAACCCTCTTACAAAATCAACGGAGAAGACA AAACAAAATCCAAGAATATGCCTCTGCGGCCTTCAGTTGATGCTCAATCAGCGGGGAGTCCAAAGTCCGAATCCAAAATAAAGGAAGCAGCCAATGTAAC AAAAGCAGGTCCAAAGATCAGTGAATCTCCAAGTTCTGATCCCACGGAGACCAAAAAGGCTGCAGTAGCCGAACGACAAAGTTCTAACATCAAAGCCACT GGCTCGGTCTCCGAGACCCCCAAGCCTGATGAGCCTTCACCTTCGTCGCCATCAGAAAATAGCGGTGCAAAATCAGGTGGGCGACAAGAATCCCAATCAA AACCGGTCGGTGAAAGAAAATCTGTCTCTCAACCTTCAACATCTTCAAGACCTGCCTTGGAGGAAAACATAGTTCTTGGCGTTGCTTTGGAGGGGTCAAA GAGGACCTTGCCTATTGAAGAAGACTCGGTTTCACCTCCGGCGGCTGGAGAGGTCAAGGAAATGGCTGCTGCCCACCGAGATGGATTGGATAATAAGAAG AAAGAGGATTCGATTTCAACTAACGCCACTGCAACTTCAGGTGATCAGTAG
AA sequence Show only first row Show all	>Lus10002652 pacid=23168809 polypeptide=Lus10002652 locus=Lus10002652.g ID=Lus10002652.BGIv1.0 annot-version=v1.0 MPGAGSLLLSHDLGLCKSQSRRQFKDTLGRSNLPSSTPGLSSCVLIVEQENSLVFFYVLLYEHLKLWNFLAGIPQCAMLHGRDSWTLPMLGTSYKSTYNA PHISNTFRCHSFLGPGQALEVPAIKAASGAFTRAYNNLQASPLVLRIAPAVGIIVFTLWGLAPLMRQIRNLILRKNDNGWKKSNTYHITTSYLRPLLLWA GVIFICRSLDPVVLPTEAGQIVKQRLLNFVQSLSTVLAFAYSLSRLIQHSQRFFMEPNEINDPRNMGLDFVGKAVYSSVWVAAFSLFMELLGFSTHKWLT AGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTVIRGEDREAVHIPNHKFTMNVVRNLTQKSHWRIKTHLAIS HLDVNKINTIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALMILISCFVKTSHIQEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYTDADYD NIPFEEPNFNRGGVASNRPLLLIEPSYKINGEDKTKSKNMPLRPSVDAQSAGSPKSESKIKEAANVTKAGPKISESPSSDPTETKKAAVAERQSSNIKAT GSVSETPKPDEPSPSSPSENSGAKSGGRQESQSKPVGERKSVSQPSTSSRPALEENIVLGVALEGSKRTLPIEEDSVSPPAAGEVKEMAAAHRDGLDNKK KEDSISTNATATSGDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Lus10002652 [exp]	0	1
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	1.4	0.9198
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	2.4	0.8994
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10027259 [exp]	4.2	0.8927
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10040964 [exp]	6.3	0.8601
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019191 [exp]	6.9	0.8093
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	7.1	0.8509
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	7.3	0.8402
AT3G50000		ATCKA2, CKA2	"casein kinase II, alpha chain...		Lus10011534 [exp]	7.4	0.8746
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10009714 [exp]	7.5	0.8793
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	11.0	0.8502

Compare expression of checked genes

Lus10002652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.