Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65470 760 / 0 O-fucosyltransferase family protein (.1) AT4G24530 725 / 0 O-fucosyltransferase family protein (.1) AT3G26370 325 / 5e-105 O-fucosyltransferase family protein (.1) AT1G35510 318 / 3e-102 O-fucosyltransferase family protein (.1) AT1G38065 293 / 1e-93 O-fucosyltransferase family protein (.1) AT2G01480 293 / 2e-92 O-fucosyltransferase family protein (.1) AT1G38131 293 / 2e-92 O-fucosyltransferase family protein (.1) AT4G38390 286 / 7e-90 RHS17 root hair specific 17 (.1) AT1G62330 285 / 1e-88 O-fucosyltransferase family protein (.1) AT1G29200 281 / 1e-88 O-fucosyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012732 [exp] 976 / 0 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10009276 [exp] 701 / 0 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10015890 [exp] 677 / 0 AT4G24530 778 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 310 / 1e-100 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 310 / 4e-100 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 314 / 5e-100 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10036875 [exp] 322 / 3e-98 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10007290 [exp] 300 / 1e-94 AT1G29200 699 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10029239 [exp] 299 / 2e-94 AT1G29200 698 / 0.0 O-fucosyltransferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011000 [exp] 822 / 0 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 712 / 0 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 320 / 4e-103 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 311 / 1e-99 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 311 / 4e-99 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.011G068300 [exp] 308 / 8e-98 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.002G087300 [exp] 300 / 1e-94 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 298 / 3e-94 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 293 / 3e-92 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 291 / 6e-92 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10002653 pacid=23168805 polypeptide=Lus10002653 locus=Lus10002653.g ID=Lus10002653.BGIv1.0 annot-version=v1.0 ATGGTTCTAGTTTCCAGTAGAGTTGATAATACTGTGGAAGGAAAGTCTTTTCCTTTTCCTGATTCTGGAACCAAGAGGGTTACTCCCAAAAAGGAACAAG GAGGAAATGTAAAGGGTAAACACACATTTGAGCTTCAAAGTGAGCTGAGTGTTCCAAAACCTAGGCATGTATCTCTACTGAAGAGTGCGGTGGAGCGCGA AATTTTGAATGAAGAACACTCGGACCTATGGACTCCTTTGACTGATCAGGGATGGCAACCATGCATAAGATCTACAGACAGCCCTTCAGTACCGGAGACA TCAGAGGGTTATCTTCAGGTGTTTCTTGATGGAGGGTTGAACCAGCAGCGTATGGGGATATGTGATGCTGTTGCAGTTGCTAAAATGTTGAATGCAACTC TTGTCATCCCACATTTTGAGGTCAATCCTGTATGGAAAGATTCAAGCTCGTTCATGGATATATTTGATGTCGATCATTTCATTAATGTCTTGAAGGACGA CATTTCCGTAGTTAGAGAATTGCCCGATGAATACTTCTGGAGCACGCGAGAGTATTACGCTGCAGCCATTCGTGATACCAGAATTAAGACCGCACCTGTC CATGCTTCAGCTAATTGGTATCTCGAAAATGTCTTGCCTGTGCTCCAGAGTTATGGTATTGCTGCGGTTGCTCCATTCTCCCATCGGTTGACTTTCGATA ACTTGCCTGACGAAATTCAACAGCTACGCTGTAAGGTCAACTTCCAGGCATTAGTGTTCGTCCCCCACATAAGAGCACTCGGGGATGCTCTCGTCAGTCG TCTCCGGTATCCTTTTATACAAAGCGGTGAAGTTCATCCCGAATATCTACGACAAACCTCAGACATTATCGTTAAACCAAAGCCGAGCAAGTTTGTAGTC CTGCACCTTCGCTTCGACAAGGACATGGCTGCTCATTCAGGTTGTTACTTTGGCGGAGGTAAAGCCGAAAAGCTGGCTCTAGCGAAGTACCGACAAGCGA TCTGGCAAGGAAGGGTTCTGAACTCCCAGTTCACCGACGAAGAGCTGAGGAATCAAGGGCGATGTCCGTTGACTCCGGAGGAGATCGGATTAGTGCTTGC GGCTTTGGGATTCGACAATACAACTCGCCTATATCTTGCTTCCCACAAGGTTTACGGTGGGGAAGCTAGAATATCAACATTGCGAACATTGTTCCCGCTC ATGGAAAGCAAGAAGAGCCTTGCTTCGTCGGAGGAACGAGCACGGATCAAACTCAAAGCTTCGCTGTTAGCTGCAGTTGACTATTACGTCGGCTTACAGA GCGACATTTTCATCTCCGCTTCTCCAGGAAACATGCACAATGCTTTGGTGGGGCATCGTACGTACAAGAACATGAAGACGATAAGGCCGAGGATGGCGTT ACTGGGGCAACTGTTCCTGAATAAGAACATAAGCTGGGGAGACTTCAGACAAGCAGTGGTTGAAGGACATGGAAGCAGACAAGGGCAGATGAGGCTAAGA AAAGCCAAGCAGTCAATATACACATATCCAGCCCCTGATTGTATGTGCCATGTTTGA
AA sequence Show only first row Show all	>Lus10002653 pacid=23168805 polypeptide=Lus10002653 locus=Lus10002653.g ID=Lus10002653.BGIv1.0 annot-version=v1.0 MVLVSSRVDNTVEGKSFPFPDSGTKRVTPKKEQGGNVKGKHTFELQSELSVPKPRHVSLLKSAVEREILNEEHSDLWTPLTDQGWQPCIRSTDSPSVPET SEGYLQVFLDGGLNQQRMGICDAVAVAKMLNATLVIPHFEVNPVWKDSSSFMDIFDVDHFINVLKDDISVVRELPDEYFWSTREYYAAAIRDTRIKTAPV HASANWYLENVLPVLQSYGIAAVAPFSHRLTFDNLPDEIQQLRCKVNFQALVFVPHIRALGDALVSRLRYPFIQSGEVHPEYLRQTSDIIVKPKPSKFVV LHLRFDKDMAAHSGCYFGGGKAEKLALAKYRQAIWQGRVLNSQFTDEELRNQGRCPLTPEEIGLVLAALGFDNTTRLYLASHKVYGGEARISTLRTLFPL MESKKSLASSEERARIKLKASLLAAVDYYVGLQSDIFISASPGNMHNALVGHRTYKNMKTIRPRMALLGQLFLNKNISWGDFRQAVVEGHGSRQGQMRLR KAKQSIYTYPAPDCMCHV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65470			O-fucosyltransferase family pr...		Lus10002653 [exp]	0	1
AT5G65470			O-fucosyltransferase family pr...		Lus10012732 [exp]	1.0	0.9011
AT2G19770		PRF5	profilin 5 (.1)		Lus10006846 [exp]	1.4	0.8771
AT1G05070			Protein of unknown function (D...		Lus10030034 [exp]	3.2	0.7688
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	4.9	0.7734
AT4G31340			myosin heavy chain-related (.1...		Lus10026967 [exp]	5.3	0.7179
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10013000 [exp]	8.8	0.7644
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	11.2	0.7680
AT5G08580			Calcium-binding EF hand family...		Lus10010165 [exp]	11.6	0.7362
AT1G78230			Outer arm dynein light chain 1...		Lus10033444 [exp]	23.0	0.7007
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10020062 [exp]	24.2	0.7408

Compare expression of checked genes

Lus10002653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.