Plant FIBer expression Database

Lus10002654 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65490 669 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012731
[exp]
1104 / 0 AT5G65490 698 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G134400
[exp]
809 / 0 AT5G65490 765 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07093 SGT1 SGT1 protein
Representative CDS sequence
>Lus10002654 pacid=23168802 polypeptide=Lus10002654 locus=Lus10002654.g ID=Lus10002654.BGIv1.0 annot-version=v1.0
ATGGCCGCCGCACCGCCGCCGTCGAGAGCTGGCGATCCTTTTTCGTCAGTCTTCTCCTCTTCCTCTCGCCTCGCCGAGGACACCGTTTTCTTCGCAATAT
ATCCAGACTGCTTCGTGTCGGATTCTCCTCCACCATCTCCTTCCCACTACCTCCAGTCTCTCCACCTCCAACTACTCCAGTTTCTCTCCTCTCATGCTTC
ATCCTACATCTGGCAGCACGAGCCGCTCTCTCTGTCGATCGTCCTTCCGCCGTCGCCGTCCAACAAATTTGCTCTTCCTCACCTCCATGGAAAGCTCCGG
TTCGGGGACAACATCGAGGACGAGTGGTTCACGGTATTTCTCCTCTTCGAGATTTCTCGAAGCTTTCCTGACCTTTCGATTCGCGCCTGGGACAACGACG
GCGAGTTCCTACTAATCGAAGCAGCTTTCCACCTTCCTCGCTGGATAGACCCGGAGACGAGCGAGAATCGTGTGTTTATTCGCCGTGGCGATCTCCGGAT
TGTCCCCAGGAATCGGCTGCCTAACCCTAGTCTATCCGATTCTTTGAAGTTTCTGCTGAATTTTGAGAGCGAGTCCCGAGCCGCGCAGCCTATTCAGAAG
GCGGTGAAGAGTCGGATTTCGGAATATCCGGATAGAGCAAGACGAAACACGCACCAGGTTAGGGTTAGGGTTCCGATGTCAGTTGCGCAGGTGCTGAAGC
ATGAGCCGTGTTTGATTTCTTTGGCGGTGGAAGGGTTCTACGACAGGGACATTGACACGATGAAGCATGCGGCGAAGATGGATAAGTTTTTGAGCAAAGG
GAGGGAGGAGGAGCTTGTTTGCGTGGCGGTTAAGATGTCTAGAGCCATGTACGCCCAGTTGATGCAGCAGAAATTTCAGGCGCCCAAGTTCTATCCAATG
CCGAATCGAAGTGAGGACTTGACGGCATATATGGAGGCAGAGTTGGGTATGAAGATTGCTTGTGGATTTGAGATGATGTATCAGCATAGGAAGAAAGAAG
GAGATGAAGTGAAAGGGAGTACCTGGGAGAAGTATGTGGAGAGCTTGGAAAACAGCGGTTACTTCCATGGTTTGTTACCTGGTTCTATGGAGTTCAAGAG
GTTAATGGAGAATGCGGAGGAGTATTACAAGAAGAGCTCGTTAGCTCTGAGAACTAGTGAAATGATTAGTGCTCCAGTGAGGCGTATTGATGATATCCTT
GCTATGCCTCAGTCAGCTGACAATTTTAAGCAATACGGCGTTCCTTCTTCAGATGATGATTCTTGGTTGTACGGTGGTGAAGTTGAGCTGAACAATGTTC
TTCAAGAGAGACAAAAGGAGCTTGATCAATACAATGCAAAACATAGAAAGAAGTCTAAAGAGACTGAAGGCAGTGATCCTTCGTCCAGCAATAATGCTGA
TGACTTCGATCTTCAAGACATGGCTAGAAGCATGCAGGGTTTTGTGGAAAAGGTGTCGAGTTTCGAGGGAGCTGAAATTCCTGAGAAAAGAGATTCAGAA
GACGTGGATCTCGATGTCAATCGCTTTCTAAAAGACATGGAATCAGTGATGAGGCGCTATAATCCTGAATCCAAAGTTGGTGAGACTGAATCTGAAGAAG
GTTCATCATCTGACATGGAATATGATGAGTCTGACGACGAAGATGATATCATGTTACCTGATGGGGATAATGAGTATGGTATAGACGGCTTTGCGAGTTC
CTACTCTACTGCTCTGAATAAGGAGCTCAAGGACACCACCATTGGCAAAACTTTTGTCAATGCCACTGGACAAACCTCCAAACAAAACGAGGGAACGTCA
AATGCAGTGGACGACGACATGGATGAAGAGTTTAAACCTATAGATGTGGATGTCAACCTGGTTAAGAACCTACTAGATTCATTTTCTTCGCAACAGGGAC
AACCGGGTCCTGCTTCCAATTTGCTAGGACTCATGGGCGTGCATCTTCCTGATGATTCCAACAAGGGGAAATGA
AA sequence
>Lus10002654 pacid=23168802 polypeptide=Lus10002654 locus=Lus10002654.g ID=Lus10002654.BGIv1.0 annot-version=v1.0
MAAAPPPSRAGDPFSSVFSSSSRLAEDTVFFAIYPDCFVSDSPPPSPSHYLQSLHLQLLQFLSSHASSYIWQHEPLSLSIVLPPSPSNKFALPHLHGKLR
FGDNIEDEWFTVFLLFEISRSFPDLSIRAWDNDGEFLLIEAAFHLPRWIDPETSENRVFIRRGDLRIVPRNRLPNPSLSDSLKFLLNFESESRAAQPIQK
AVKSRISEYPDRARRNTHQVRVRVPMSVAQVLKHEPCLISLAVEGFYDRDIDTMKHAAKMDKFLSKGREEELVCVAVKMSRAMYAQLMQQKFQAPKFYPM
PNRSEDLTAYMEAELGMKIACGFEMMYQHRKKEGDEVKGSTWEKYVESLENSGYFHGLLPGSMEFKRLMENAEEYYKKSSLALRTSEMISAPVRRIDDIL
AMPQSADNFKQYGVPSSDDDSWLYGGEVELNNVLQERQKELDQYNAKHRKKSKETEGSDPSSSNNADDFDLQDMARSMQGFVEKVSSFEGAEIPEKRDSE
DVDLDVNRFLKDMESVMRRYNPESKVGETESEEGSSSDMEYDESDDEDDIMLPDGDNEYGIDGFASSYSTALNKELKDTTIGKTFVNATGQTSKQNEGTS
NAVDDDMDEEFKPIDVDVNLVKNLLDSFSSQQGQPGPASNLLGLMGVHLPDDSNKGK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G65490 unknown protein Lus10002654
[exp]
0 1
AT1G70310 SPDS2 spermidine synthase 2 (.1) Lus10030629
[exp]
3.3 0.8696
AT3G48610 NPC6 non-specific phospholipase C6 ... Lus10035935
[exp]
4.5 0.8586
AT4G35540 zinc ion binding;transcription... Lus10014847
[exp]
7.7 0.8105
AT3G02645 Plant protein of unknown funct... Lus10009504
[exp]
8.1 0.8358
AT3G08970 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1... Lus10002852
[exp]
9.8 0.8160
AT4G12040 AtSAP7 stress-associated protein 7, A... Lus10030150
[exp]
14.6 0.7976
AT3G46740 MAR1, TOC75-III... MODIFIER OF ARG1 1, translocon... Lus10016508
[exp]
15.5 0.8436
AT1G69680 Mog1/PsbP/DUF1795-like photosy... Lus10012837
[exp]
17.3 0.7910
AT1G13410 Tetratricopeptide repeat (TPR)... Lus10017243
[exp]
18.0 0.8069
AT2G37060 CCAAT NF-YB8 "nuclear factor Y, subunit B8"... Lus10015058
[exp]
19.0 0.8373

Lus10002654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.