Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22560 437 / 8e-136 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 343 / 4e-102 Kinase interacting (KIP1-like) family protein (.1) AT1G09720 317 / 3e-92 Kinase interacting (KIP1-like) family protein (.1) AT1G58210 272 / 1e-62 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) AT3G22790 115 / 1e-25 Kinase interacting (KIP1-like) family protein (.1) AT1G03080 107 / 3e-23 kinase interacting (KIP1-like) family protein (.1) AT4G14760 107 / 4e-23 kinase interacting (KIP1-like) family protein (.1) AT4G02710 98 / 2e-20 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 84 / 2e-16 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G58320 83 / 4e-16 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012730 [exp] 1805 / 0 AT2G22560 430 / 9e-134 Kinase interacting (KIP1-like) family protein (.1) Lus10025717 [exp] 678 / 0 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 532 / 1e-170 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10032844 [exp] 200 / 5e-53 AT1G58210 280 / 4e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10001866 [exp] 192 / 2e-50 AT1G58210 281 / 1e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10039359 [exp] 114 / 3e-25 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 102 / 1e-21 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 102 / 1e-21 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 98 / 3e-20 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011300 [exp] 477 / 2e-150 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 454 / 5e-142 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 347 / 1e-102 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.010G083300 [exp] 119 / 9e-27 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 115 / 2e-26 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 114 / 3e-25 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 108 / 2e-23 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.019G131000 [exp] 92 / 1e-18 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.013G158100 [exp] 90 / 5e-18 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.003G164200 [exp] 80 / 8e-16 AT1G03080 109 / 1e-26 kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10002655 pacid=23168798 polypeptide=Lus10002655 locus=Lus10002655.g ID=Lus10002655.BGIv1.0 annot-version=v1.0 ATGTTGCAGAGGGCAGCAGGGAATGCTTATTCATGGTGGTGGGCAAGCCACATCAGAACCAAGCAATCAAAATGGCTCGAACAAAATCTTCAAGATATGG AAGAAAAGGTGCACTCAGTCATGGCGCTGGTATCAGAGGATGGGGATTCATTTGCAAAGAGGGCAGAAATGTACTACAAGAAAAGGCCAGAAATCGTCAT TTTTGTGGAGGAAGCATACAGAGCTTACAGGGCATTAGCAGAAAGGTATGATCACATCTCCACGGAGCTTCAGAATGCCAACAACACCATCGCCTATGTC TTCCCTGAGCAAGTTCAGTTCGCAATGGAAGAGGAAGACGACATACCCTCCCCGAGGTTCCTTAAAAAGGCTTCTGGGGATTTACCGCCGAAAGGAAACA TCCCGAAAGTCCCCAAGTTCACAAAAGAGATCAAGGGAATGTTCCAATCCGCCACCAAGAAGCTGCAGCCTAAGAAATCGATGAAAGCGTCAGCAAGTTC TGTTTCAAAATCCGGTCTGACGAAACCTGAGGCGTTGAAGGAGATAGACAAGCTTCAGAAGCAGGTTCTTGGGTTGCAGACGGAGAAAGAGTTTGTGAAA AGCTCGTATGAGAATGGGTTGGCCAAGTATTGGGAGATTGATCAGCAGATTAGGGAGATTCAGGATAAAGCTTGTACCTTGCAGGAAGAGTTTGGCACGG AGAACGTTATTGAAGATGATGAAGCTCGATCGGTGATGACTTCCGCTGCGTTGAGATCGTGTCAGGAGACATTGGCTAAGTTAGAGGAGAAGCAAGAGAA ATCAGTTGAGGAAGCGAAGAAAGAACGGCAAAGGATCAGAGAAGCTAAGGAGAAACTCAAGTCTCTTCAAACCTCCGATCACGAGACCAATATTATCGAT AAAGAGAAGTTCGATCCTCATCGTCCAACTGGCGAGGATGAGAAGGAAAAAGAGGAGCTAAGATCGCTCCAACAACAGAGAGAAGAAATCGAGTTATTGC GAGAGAAGATCAAGAAGCACTTCGAAGCAAGTGCCGATACATCCTTCACAGTGAGCGAAATGGCCGAGAAGATCGACGAGCTTGTGAACAAGGTGGTCGG GTTAGAAGCAGCGGTTTCGTCGCAGTCTGCTCTGATCCAGAGGATGAGGAACGAGACGGATGAACTCCATGGCGAGATTCGGAGCTTAGAGGAGGAGAAA GGAAAAGAAGGGGTGAGTTTGGATGACAAGTTGGAGGAAATGGAGAGAAAGCTAGAAGGAATTCAGGAGATCAACGAGAATGTTGATGATCAAAGCACGA ACCTTCAAACGAATTTCATGGATGCGAAGTGTAACTTGGACCACCTTTACGAGAAGATGGACAGTGTAAAGCCAGACGAGGGCGAGATCCACACTCCACA GTCGGTGTTGCTTAAGAAGAAAGCACCTAAGTTAGAATCACCACAGCAACAACCGTTTGTTAAAGGGAAGAATATAAGAAATGCAGTGGTTGAGTTTGAT AACTCAATCAAACAAGACAAAGCCAAAAGTGAGAAAGAGTTGAAACAACAGCAGGTAGCTGATGAGATTAGGGCAGCGAGGGAGGCTAGGAAGAAGGTGA AGAAACCAAAGAAGGAAAAGAAGGTAAAACAAGTAGTTACAGAAAAGCAGGAAGCAAATGTGAGAACAGAAGAGCAAGGAGACGTTAATGCAACTGAAGG AAGAAGTGATGCAGATGTGAGTGAAGTAGAGAAAACTAGACCACCAAAGGAACAACAAGAAGAAGAAGAGAAGACAGAAAGAGATGATTCAGGGAAAGGG ACTCAACCAGATATCAGACATGATGATGGTGAACCTAAAGAAAATTATGCAGTAGCAAAACAGAAGTCTTTAAGGAAACTCGACCGCCTCGATGCTACTG AAACAAGTGAGAAAGTGGAAGAGAAGGCTACATCATTAACAACAATGCCTAATGACAGTGTTCATCAACAAGGAGAAGAAAGGAAGGGACAAGAAGAAGA CTCGCCAAATCATTCAGTTGAAGCAGACAGCAAAAGTAAGCAAGAAATGAGTAGCCTGTTGGGGAATGATTTAGACAAAGGAAAGGACTCTTTGGAGGAT CCCAGTGAAGATAAGACTGTTACAAAGCAAAAATCTTTGAAGAAACTTGAAAAGCTTACTGTCGAGGATCAAGAACAAGTGGCAGCTGCTGCTGCTGCAG CGGTTGATGTTACTGCTGAATCACATGCAAGTTCATCCGGGGATGCTGCGGCTGAAGCAAAAGAAGAAGTAGATGATCCTAGTGTCAAAACACAAGACGA AAACAGAGTAATATTATCACCACTAGCTGCTGCAGCTGATCATAGTGTTAAAACGGAAGACGACAATGCAGCATCCAAGACTGGAAATGAAGACGATGCA GCTGGTGATAACATTAAAAGGGAAGACAATAATGCAGCATCCAAGACTAGAAATGAAGATGATGAGCCAGACTGGAAAGAGTTGTTCTTGAAAGGTGTGG AAAATCGAGAACAAGTTCTTCTTGCAGAATACACGACCATCCTACGAAACTTTAAAGAAGTGAAGAAGAAGCTCAGTGAATCAGAAGCCAAAGGAGGGGA TAGTATGTTTGATATAACCATTCAGCTGAGAGAATTGAGGGCAGCTAATGCTAAAAAGGATGAACAGATTCGAATGTTAAGAAAAAGACTGAGTAAAATG CAAGAAGCAGGAGACGACGATGAGAACCCAGATTCGCCATTTTCGGAGGCTGATATGTTAGCAGACATGAATCTGGATCTGGGAGATGATATTTCCCCCA TTGAAGAGAAGTTCCGATCAAGCATTGACGAAGTTTTGGAGGATAACTTGGACTTCTGGCTCAGATTCAGCACCACATTTCAGCAGGTACAACAATTTGA AACAGAAGTCAGCGACTTGCAATCCGAGTTGACCGAACTCGAGGAAAAGCTGAGCAAGCAAGACGCAAGTAGCCACGGGAAGTACAGTCTGAAATCAGAT GCAAGGCCATTGTATAAGCACCTAAGGGAAATCCACACCGAACTAATAGTCTGGATTGATAAAGGTATGCTCTTGAAAGATGAACTTAAAGGAAGATTCT CTGCATTGTGTGAAATTCAAGACGAGATCACATCCGCTCTCAAGGAGAGCGCCGAGGATGAAGATTTCACCTTCACAAGCTACCAGGCTGCGAAATTTCA GGGCGAAATTCTCAACATGAAGCAAGAGAATACCAGGGTTGGAGATGAGTTGCAGGCTGGACTTGATCATGTAACCAACCTGCAACTTGAGGTGGACAAG ACGTTACACAGGTTAAATGAAAAGTTCAAACTTTCTGGATCAAAGAATCGTCAAACTATCCAGCTTCAACACACAGAGAGCCGATCTCGAGTTCCATTGA GATCATTCATTTTTGGAGTCAAACAGAAAAAGCAAAGACATTCCATCTTCTCCGTTGTCAATCCAGTACTCCACAGGAAGTACAATGGCTTAAAATCAGG ACTCAATCTATAG
AA sequence Show only first row Show all	>Lus10002655 pacid=23168798 polypeptide=Lus10002655 locus=Lus10002655.g ID=Lus10002655.BGIv1.0 annot-version=v1.0 MLQRAAGNAYSWWWASHIRTKQSKWLEQNLQDMEEKVHSVMALVSEDGDSFAKRAEMYYKKRPEIVIFVEEAYRAYRALAERYDHISTELQNANNTIAYV FPEQVQFAMEEEDDIPSPRFLKKASGDLPPKGNIPKVPKFTKEIKGMFQSATKKLQPKKSMKASASSVSKSGLTKPEALKEIDKLQKQVLGLQTEKEFVK SSYENGLAKYWEIDQQIREIQDKACTLQEEFGTENVIEDDEARSVMTSAALRSCQETLAKLEEKQEKSVEEAKKERQRIREAKEKLKSLQTSDHETNIID KEKFDPHRPTGEDEKEKEELRSLQQQREEIELLREKIKKHFEASADTSFTVSEMAEKIDELVNKVVGLEAAVSSQSALIQRMRNETDELHGEIRSLEEEK GKEGVSLDDKLEEMERKLEGIQEINENVDDQSTNLQTNFMDAKCNLDHLYEKMDSVKPDEGEIHTPQSVLLKKKAPKLESPQQQPFVKGKNIRNAVVEFD NSIKQDKAKSEKELKQQQVADEIRAAREARKKVKKPKKEKKVKQVVTEKQEANVRTEEQGDVNATEGRSDADVSEVEKTRPPKEQQEEEEKTERDDSGKG TQPDIRHDDGEPKENYAVAKQKSLRKLDRLDATETSEKVEEKATSLTTMPNDSVHQQGEERKGQEEDSPNHSVEADSKSKQEMSSLLGNDLDKGKDSLED PSEDKTVTKQKSLKKLEKLTVEDQEQVAAAAAAAVDVTAESHASSSGDAAAEAKEEVDDPSVKTQDENRVILSPLAAAADHSVKTEDDNAASKTGNEDDA AGDNIKREDNNAASKTRNEDDEPDWKELFLKGVENREQVLLAEYTTILRNFKEVKKKLSESEAKGGDSMFDITIQLRELRAANAKKDEQIRMLRKRLSKM QEAGDDDENPDSPFSEADMLADMNLDLGDDISPIEEKFRSSIDEVLEDNLDFWLRFSTTFQQVQQFETEVSDLQSELTELEEKLSKQDASSHGKYSLKSD ARPLYKHLREIHTELIVWIDKGMLLKDELKGRFSALCEIQDEITSALKESAEDEDFTFTSYQAAKFQGEILNMKQENTRVGDELQAGLDHVTNLQLEVDK TLHRLNEKFKLSGSKNRQTIQLQHTESRSRVPLRSFIFGVKQKKQRHSIFSVVNPVLHRKYNGLKSGLNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22560			Kinase interacting (KIP1-like)...		Lus10002655 [exp]	0	1
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	2.0	0.9364
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10026653 [exp]	5.3	0.8900
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	6.5	0.9122
AT5G05570			transducin family protein / WD...		Lus10001254 [exp]	6.5	0.9029
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10002070 [exp]	11.0	0.8451
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026156 [exp]	13.4	0.8613
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	17.3	0.8877
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	18.8	0.8799
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10011697 [exp]	18.8	0.8436
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10017223 [exp]	19.3	0.8329

Compare expression of checked genes

Lus10002655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.