Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10520 107 / 8e-28 RBK1 ROP binding protein kinases 1 (.1) AT5G65530 99 / 8e-25 Protein kinase superfamily protein (.1) AT3G05140 68 / 8e-14 RBK2 ROP binding protein kinases 2 (.1) AT5G18910 67 / 1e-13 Protein kinase superfamily protein (.1) AT1G21590 67 / 1e-13 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G18890 61 / 1e-11 Protein kinase superfamily protein (.1.2) AT5G57670 61 / 2e-11 Protein kinase superfamily protein (.2) AT5G35960 60 / 3e-11 Protein kinase family protein (.1) AT5G62230 60 / 4e-11 ERL1 ERECTA-like 1 (.1.2) AT1G49270 59 / 6e-11 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025713 [exp] 226 / 2e-73 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10035949 [exp] 172 / 5e-52 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10012727 [exp] 165 / 1e-48 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10027964 [exp] 102 / 6e-28 AT5G35960 163 / 7e-48 Protein kinase family protein (.1) Lus10034000 [exp] 69 / 4e-14 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10012776 [exp] 68 / 1e-13 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10000773 [exp] 66 / 3e-13 AT5G56790 74 / 2e-14 Protein kinase superfamily protein (.1) Lus10003503 [exp] 63 / 2e-12 AT1G72180 278 / 2e-87 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025468 [exp] 63 / 3e-12 AT2G18890 258 / 6e-86 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011700 [exp] 124 / 4e-34 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.013G028100 [exp] 73 / 1e-15 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.014G136300 [exp] 61 / 1e-11 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.012G130400 [exp] 61 / 2e-11 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.010G027301 [exp] 61 / 2e-11 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.006G173700 [exp] 61 / 3e-11 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.004G105200 [exp] 60 / 4e-11 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.015G132200 [exp] 59 / 7e-11 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.017G110400 [exp] 59 / 1e-10 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.018G096100 [exp] 59 / 1e-10 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002658 pacid=23168813 polypeptide=Lus10002658 locus=Lus10002658.g ID=Lus10002658.BGIv1.0 annot-version=v1.0 ATGTCTAGACTGGGAGAAAGATACAGAGCAGCAGTAGGAATTGCAGAGGGGCTAAGGTACCTTCACCATGATTGCCCGAGGCGTGTCATCCACCGTGACA TCAAAGCTTCCAGCAGCTTGCTTGCTGAAGATTATGAAGCTCAGGCGAAACCATTGTTGGAAGCGAAGGACGCGAACACATTGGTGGATCCAAGGCTAGG GAACGACTTCAACATGTCCGAAATGAAGCGAGCAATGGTGACGGCATTCTTGTGTATCGACCACGACTCGAAGATGCGACCTGCTATGACTCGGGCCGTG CAAATACTCAACGGGGAAGACGTAGCCATTGGTGCTGTGATGGTACAGAAGACGAGCTCAGGGAGGGGCGATTTATTGGATGCTAGTGACTTGCAAGATT ACACGTGTACTTCCAACTACCTCAACGACCTTAACCGTCATATGCAGCTTGTCATGGAATGA
AA sequence Show only first row Show all	>Lus10002658 pacid=23168813 polypeptide=Lus10002658 locus=Lus10002658.g ID=Lus10002658.BGIv1.0 annot-version=v1.0 MSRLGERYRAAVGIAEGLRYLHHDCPRRVIHRDIKASSSLLAEDYEAQAKPLLEAKDANTLVDPRLGNDFNMSEMKRAMVTAFLCIDHDSKMRPAMTRAV QILNGEDVAIGAVMVQKTSSGRGDLLDASDLQDYTCTSNYLNDLNRHMQLVME

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05140		RBK2	ROP binding protein kinases 2 ...		Lus10002658 [exp]	0	1

Compare expression of checked genes

Lus10002658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.