Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10520 164 / 4e-48 RBK1 ROP binding protein kinases 1 (.1) AT5G65530 156 / 6e-45 Protein kinase superfamily protein (.1) AT5G18910 114 / 4e-29 Protein kinase superfamily protein (.1) AT5G35960 107 / 4e-27 Protein kinase family protein (.1) AT3G05140 107 / 8e-27 RBK2 ROP binding protein kinases 2 (.1) AT2G18890 82 / 1e-18 Protein kinase superfamily protein (.1.2) AT1G77280 81 / 4e-17 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G29740 80 / 5e-17 Leucine-rich repeat transmembrane protein kinase (.1) AT5G57670 78 / 2e-16 Protein kinase superfamily protein (.2) AT1G16130 77 / 6e-16 WAKL2 wall associated kinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012727 [exp] 309 / 2e-102 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10025713 [exp] 211 / 2e-66 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10035949 [exp] 211 / 2e-65 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10041248 [exp] 112 / 3e-28 AT5G18860 362 / 5e-117 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10034000 [exp] 112 / 4e-28 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10012776 [exp] 110 / 1e-27 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10018959 [exp] 104 / 1e-25 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10008192 [exp] 103 / 2e-25 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10006957 [exp] 97 / 2e-23 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011700 [exp] 189 / 1e-57 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.013G028100 [exp] 112 / 2e-28 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.010G027301 [exp] 112 / 3e-28 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136300 [exp] 106 / 2e-26 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.008G197800 [exp] 102 / 7e-25 AT5G18910 348 / 2e-115 Protein kinase superfamily protein (.1) Potri.006G173700 [exp] 91 / 6e-21 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 90 / 2e-20 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.018G091200 [exp] 88 / 4e-20 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G166600 [exp] 86 / 2e-19 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.004G063500 [exp] 83 / 4e-18 AT1G29750 1182 / 0.0 receptor-like kinase in flowers 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10002659 pacid=23168789 polypeptide=Lus10002659 locus=Lus10002659.g ID=Lus10002659.BGIv1.0 annot-version=v1.0 ATGAAGACATTGAGATCATGGACGACACTAACCAACCTTGGTCGGCGACGCAAAAGAGAGTTCATCACCGTCGACGATCCCTCGCCCAGCTCCGCCGGCT TTGGTAGCTTGTCGGAGAAACAGGTCGATCGAGAAACGGAAGAAGTAGTGACTGACAGCAGCAATAATAACATCCAGTGGAAATCCATGTTCGGAAACAT TAAGAAGAAATCGGTGCGGAGATTCTCAGTCATCCAGTTGATGTCACCGTACGAGACCATCAACAAGATTAACTTCGTCAAGAAGAAACTGACTAACAGA GTTAATAATAAGGAGCTCGCCGGAGATGGGGAATTCGACGGCGGCTTCCCCTTTCACAAACCCTCTTGGAAGAACTTCCGATACAAGGAGCTTGTTGCGG CCACCGACGATTTCAACCCCGAAAACTTGATTGGTAAAGAAGGGTATGCAGACGTGTACAAAGGGCATTTGCCAGACGGGAGAGTAGTAGCTGTGAAGAA GATAATGATGAAGACTGATAAGAAAGAAGAGGACATGACTGCCGATTTCTTATCAGAGCTCGGCATCATTGCGGACATAAACTACCCCAACGCAGCGAAA CTCGTCGGCTTCAGCATCGACAGTGTGCTCGAGTTCCTTCCTTACGGCAGCCTTGGCAATAAGCTCCACGGTACGTACCTAATATTTGCAAGTTTTGAGA CCGGTAACGTAACACGGTCATAA
AA sequence Show only first row Show all	>Lus10002659 pacid=23168789 polypeptide=Lus10002659 locus=Lus10002659.g ID=Lus10002659.BGIv1.0 annot-version=v1.0 MKTLRSWTTLTNLGRRRKREFITVDDPSPSSAGFGSLSEKQVDRETEEVVTDSSNNNIQWKSMFGNIKKKSVRRFSVIQLMSPYETINKINFVKKKLTNR VNNKELAGDGEFDGGFPFHKPSWKNFRYKELVAATDDFNPENLIGKEGYADVYKGHLPDGRVVAVKKIMMKTDKKEEDMTADFLSELGIIADINYPNAAK LVGFSIDSVLEFLPYGSLGNKLHGTYLIFASFETGNVTRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Lus10002659 [exp]	0	1
AT5G41020	MYB		myb family transcription facto...		Lus10022932 [exp]	1.0	0.9996
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10039713 [exp]	2.4	0.9851
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Lus10015017 [exp]	2.4	0.9839
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10027372 [exp]	4.2	0.9473
					Lus10004634 [exp]	4.9	0.9644
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	5.7	0.9552
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10019783 [exp]	6.0	0.9571
AT1G17960			Threonyl-tRNA synthetase (.1)		Lus10030644 [exp]	6.3	0.9624
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10001914 [exp]	9.5	0.9555
					Lus10040143 [exp]	9.9	0.8509

Compare expression of checked genes

Lus10002659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.