Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 300 / 4e-95 ATTPS21 terpene synthase 21 (.1.2) AT3G14520 301 / 1e-94 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14540 286 / 4e-89 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 285 / 1e-88 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 283 / 6e-88 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 280 / 2e-86 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 263 / 3e-80 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G20230 257 / 6e-78 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 256 / 2e-77 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G32030 253 / 3e-76 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040043 [exp] 556 / 0 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10008611 [exp] 543 / 0 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10042204 [exp] 542 / 0 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10014724 [exp] 537 / 0 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10042202 [exp] 511 / 4e-177 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10008614 [exp] 499 / 2e-172 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10031590 [exp] 430 / 3e-145 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10031589 [exp] 355 / 2e-115 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10012312 [exp] 244 / 6e-73 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095500 [exp] 562 / 0 AT5G23960 408 / 6e-137 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 437 / 1e-147 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 421 / 7e-142 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 418 / 1e-140 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.011G130666 [exp] 349 / 1e-115 AT5G23960 220 / 4e-66 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 351 / 1e-114 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 346 / 2e-112 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 338 / 1e-109 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 338 / 1e-109 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 334 / 4e-108 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10002660 pacid=23168797 polypeptide=Lus10002660 locus=Lus10002660.g ID=Lus10002660.BGIv1.0 annot-version=v1.0 ATGGCCAACTCCGGCGAGACAACCACCGCTGTGACTGCGAATGAGCGCCGTACGGCCTACTTCCACCCGACGGTTTGGGGGGACTTCTTTCTTGCCCGTG CCTTCAATACTCAAGAGACGGTAGATGGTTGGAATGAGGAAATCGAAGTGCTGAAAGAAGATGTTAAGGTGATGCTAACAACCTCGACCGAAAAGCTCTC TGAAAAGCTGAAGCTAATGACGTTGTGGAGAGACTGGGCATTGGTTACCATTTCGAAACTGAGATCGAAGAGCAGCTCGAACAGATCTACAATATCGGCC GCGGTAACAATATTATTATTGATGATGACCTCTCCACCGTTTAGACTGCTCAGACAGCATGGCTACAATGTGAACAGCGATACATTCAACGAGTTCAAGA ACGAACAAGGAAGCTTCAAACAAGAGCTGGTGAATGACGTCCATGGGATGCTGAGCATGTACGAAGCTGCGTATCTTCGAAAGCGCGGGGAGACTGTACT AGACGAAGCTATCGAGTTCACAACGGTTCACCTGACCAACATTGTCGCCAACTTGGTTGGCGGAGATGGCGATCAGGTACTTCTGGGGGAACGAGTTGCT CGTGCTTTAAGAAGGCCCCTTCGCAAAGGGGTCGAAAAGCATGAGCAACTCTTCTTCATCTCCAATTACAAGAAAGAAGAGGGTCACAATCGGATGCTCA TCAAGCTGGCACAGTTGAGTTGGAATGTTCTTCAACACTTGTACCAACAAGAGCTTAGAGACATTACCAAGTGGTGGATTGACTTGGACTTTGCGACGAA ACTTTCTTTCGCTCGAGACCGGTTGATCGAGGTTTATTTTTGGGCAGTGGGAGCCATGTGGGAACCCAAATTTTCACTGGCTAGATATATTTTGACAAAA ATTACTATTCTTGTCTCGATTAACGATGACATCTACGATGTCCACGGTACAATCGACGAACTAGAGCTGCTAACCGCTGCTGTTGAGAGATGGGACACTA GCATGAAGGATCTCCCAGAGTACATGAGGTTATTCTACGGAGCAGTTATCGGTGTCGTGGACGAAATCGACTCGATTACTTCCAAACAAGGAAGGCCCTT TTGTGCTGACTACGGCAAGCAAGCGGAAAGGAATCAAATGAGAGCCTACCTGACAGAAGCAAGATGGTTCGCGAAAGGGGAAGTGCCAACGATTCAGGAA TACAGGCGTGTGGGTGTCTACTCTTGTACTTACCCCTTGTTGGCATACTCAGCCCTATGTGGCTTGGCTGACAACAAGGCACCGAAAGAGGCGTTTGATT GGTTGATGGCCGATCCCAAGATCCTAGTTGCTGTGTCGGATCACTGTCGCCTCATGGATGACATCGTTTCTCATGAATTCGAGCAGGAAAGGGGGCATGT TGCTTCGGCGGTCGAGTGCTATATGAAACAGTATGATGTGTCGCGGTTGGAGGCCGTTGATGTACTGAACCAGTTTCTGGAGGATGACTGGAAGGACATC AATGAGGAGTGCCTAAACTCACCCAGTTTCATCTCTAAGGAAGTCCTATCGATGTTCGTCGGGCTAGCCAAGGTTATGGAGGTTCTGTACAAGGATTTCG ATAGCTATACCGTCTCCAACACTGTTACAAGGGACATGATGACTGCTCTGCTCGTCACTCCTATGATCTAA
AA sequence Show only first row Show all	>Lus10002660 pacid=23168797 polypeptide=Lus10002660 locus=Lus10002660.g ID=Lus10002660.BGIv1.0 annot-version=v1.0 MANSGETTTAVTANERRTAYFHPTVWGDFFLARAFNTQETVDGWNEEIEVLKEDVKVMLTTSTEKLSEKLKLMTLWRDWALVTISKLRSKSSSNRSTISA AVTILLLMMTSPPFRLLRQHGYNVNSDTFNEFKNEQGSFKQELVNDVHGMLSMYEAAYLRKRGETVLDEAIEFTTVHLTNIVANLVGGDGDQVLLGERVA RALRRPLRKGVEKHEQLFFISNYKKEEGHNRMLIKLAQLSWNVLQHLYQQELRDITKWWIDLDFATKLSFARDRLIEVYFWAVGAMWEPKFSLARYILTK ITILVSINDDIYDVHGTIDELELLTAAVERWDTSMKDLPEYMRLFYGAVIGVVDEIDSITSKQGRPFCADYGKQAERNQMRAYLTEARWFAKGEVPTIQE YRRVGVYSCTYPLLAYSALCGLADNKAPKEAFDWLMADPKILVAVSDHCRLMDDIVSHEFEQERGHVASAVECYMKQYDVSRLEAVDVLNQFLEDDWKDI NEECLNSPSFISKEVLSMFVGLAKVMEVLYKDFDSYTVSNTVTRDMMTALLVTPMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14520		AtTPS18	Terpenoid cyclases/Protein pre...		Lus10002660 [exp]	0	1
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	2.6	0.9369
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10035555 [exp]	4.7	0.8824
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10031855 [exp]	6.0	0.9250
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	7.7	0.9097
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10031933 [exp]	7.7	0.9049
AT5G15230		GASA4	GAST1 protein homolog 4 (.1.2)		Lus10030680 [exp]	8.1	0.8571
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10025729 [exp]	13.6	0.9008
AT3G45070			P-loop containing nucleoside t...		Lus10033716 [exp]	15.7	0.8719
AT3G19430			late embryogenesis abundant pr...		Lus10021837 [exp]	16.7	0.9159
					Lus10029354 [exp]	18.6	0.8113

Compare expression of checked genes

Lus10002660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.