Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 298 / 7e-96 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26330 288 / 4e-92 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26310 284 / 2e-90 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26320 281 / 2e-89 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT5G25120 280 / 1e-88 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT1G13110 279 / 2e-88 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT5G57260 278 / 6e-88 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT5G25140 277 / 1e-87 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT4G31500 276 / 3e-87 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT5G25180 275 / 4e-87 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043362 [exp] 424 / 6e-145 AT3G26330 365 / 3e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10024518 [exp] 409 / 2e-138 AT3G26310 363 / 3e-120 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) Lus10016601 [exp] 392 / 5e-132 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10030708 [exp] 387 / 2e-130 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10013194 [exp] 381 / 9e-128 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10038796 [exp] 372 / 2e-124 AT3G26300 364 / 5e-121 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10009903 [exp] 364 / 3e-121 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10042815 [exp] 360 / 1e-119 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016599 [exp] 356 / 7e-118 AT3G26330 395 / 7e-133 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 395 / 1e-133 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 389 / 6e-131 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 384 / 4e-129 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 384 / 8e-129 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 381 / 4e-128 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 380 / 2e-127 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 380 / 2e-127 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.007G074900 [exp] 377 / 2e-126 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 372 / 2e-124 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G028000 [exp] 329 / 1e-107 AT1G13080 326 / 3e-106 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10002661 pacid=23168794 polypeptide=Lus10002661 locus=Lus10002661.g ID=Lus10002661.BGIv1.0 annot-version=v1.0 ATGGAAGAAGTAGTTAGCCATGGCAGCAGCTTGTTCATCATCTTCATCCTCTTCCTTATAACAATCTTCACACTACAAAAATCCCTGACGAAAACGACCC ACTCCCCACGGCTACCACCAGGACCAAGGAAGCTACCGATAATCGGAAACCTCCACCAGCTCGTACCCGGAAACTCTCTACCGCACCGCCGGATAGCAGA CTTAGCCAGGCAATACGGTCCCCTGATGCACCTGACCATTGGGGAAACCTCAAACGTCGTCGTTTCATCACCTGAACTAGCCAAGCAGTTCCTTCAGACT CACGACCTTCACTTCGCCACGAGGCCCTACCTGCCCTCTGCCGCCATCATCTTCTACAATGCCAGCTTACGGAGAGTACTGGAGGCAGATGCGCAAGATC TGCACGCTCGAGCTGTTCAGCGCACACCGCGTGAGGATGCTCCGGCCTGTGAGGGAAGAGGAGGTCGGCGAGCTTGGAAAATGATGAAACAGGAGGAAGC GTTCACACCGGTGATGAACAAGATCGTGAAGGTGATTGGTGGGTTAACCATAGGGGATATCTTCCCGTCGAATAGGTTACTGCGGATTATCAGTGGAGCA GAGTGGCAACTGAAGAAGCTCCACAGAGAAGCTGACGCAATACTTGAAGGAATCATTGATGAACATTTACAGAGAAGATCATCACCAGAAAGACGATCAT CATGTGCAGCTGCTGCTGAAGATCAAGATCTAGTTGATATTCTCTTGAATTTCACCGACAAGGAGGATCTGGGTTTCCCTATTACTAACCTTGAGATTAA GGCTGTCATCCTGGATATGTTTCTGGCCGGAGGGGACTCGTCATCGATGATAGTAGAGTGGGCAATGTCCGAACTGATGAAGAATCCCTCGGCAATGCGA AAGGCACAAAGGGAAGTAAGAGAAGCATTCAACTCTCATGGCAAAGTTGACGAAGCTGGTCTTCACAAACTGCACTATCTACCACTAATCGTCAAAGAAA CTTTCCGACTACACCCTGCTGCTCCTTTGCTTCTTCCAAGGGAACGCCGAGAGACGGTTGTCATTGATGGGTATCAAATACCGGCCAAGACGAGGGTGAT CATCAATGCGTGGGCAATTGGCCAAGATCCGAACCATTGGTCCGACCCAGATGAGTTCAAGCCGGAAAGGTTCCTTGACACCAGTGTAGAGTACAAGGGG CAACATTTCCAGCTCATTCCGTTTGGGGCTGGACGCAGGGTTTGCTCAGGCATGCAGTATGGGGTTGCTGTCGTCGAGTTTTTGCTCGCGAGTTTGCTCT ATCATTTCGATTGGAAGCTCCCCGAGGGGATGAAGCCCGAGGATCTTGATATGATTGAAGAGTATGGAGATGCCGTTACTAGGAAGAATAGTTTGTTTCT TATTGCTGTCCCTTATACCACCCATGATCGAGTAACTTGTTAG
AA sequence Show only first row Show all	>Lus10002661 pacid=23168794 polypeptide=Lus10002661 locus=Lus10002661.g ID=Lus10002661.BGIv1.0 annot-version=v1.0 MEEVVSHGSSLFIIFILFLITIFTLQKSLTKTTHSPRLPPGPRKLPIIGNLHQLVPGNSLPHRRIADLARQYGPLMHLTIGETSNVVVSSPELAKQFLQT HDLHFATRPYLPSAAIIFYNASLRRVLEADAQDLHARAVQRTPREDAPACEGRGGRRAWKMMKQEEAFTPVMNKIVKVIGGLTIGDIFPSNRLLRIISGA EWQLKKLHREADAILEGIIDEHLQRRSSPERRSSCAAAAEDQDLVDILLNFTDKEDLGFPITNLEIKAVILDMFLAGGDSSSMIVEWAMSELMKNPSAMR KAQREVREAFNSHGKVDEAGLHKLHYLPLIVKETFRLHPAAPLLLPRERRETVVIDGYQIPAKTRVIINAWAIGQDPNHWSDPDEFKPERFLDTSVEYKG QHFQLIPFGAGRRVCSGMQYGVAVVEFLLASLLYHFDWKLPEGMKPEDLDMIEEYGDAVTRKNSLFLIAVPYTTHDRVTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10002661 [exp]	0	1
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10016249 [exp]	2.6	0.9501
AT3G49950	GRAS		GRAS family transcription fact...		Lus10011076 [exp]	4.0	0.9319
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10030554 [exp]	6.9	0.9232
AT2G17080			Arabidopsis protein of unknown...		Lus10025120 [exp]	11.2	0.9180
AT3G49950	GRAS		GRAS family transcription fact...		Lus10014852 [exp]	11.7	0.9156
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	15.1	0.9182
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10036777 [exp]	15.7	0.8866
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10002663 [exp]	16.2	0.9090
AT5G56040			Leucine-rich receptor-like pro...		Lus10032954 [exp]	18.3	0.9131
AT2G17080			Arabidopsis protein of unknown...		Lus10025119 [exp]	21.6	0.9015

Compare expression of checked genes

Lus10002661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.