Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22600 136 / 3e-34 RNA-binding KH domain-containing protein (.1) AT1G51580 97 / 3e-21 RNA-binding KH domain-containing protein (.1) AT5G64390 93 / 1e-19 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G15270 67 / 1e-11 RNA-binding KH domain-containing protein (.1.2) AT5G09560 59 / 5e-09 RNA-binding KH domain-containing protein (.1) AT5G53060 58 / 1e-08 RNA-binding KH domain-containing protein (.1.2) AT5G46190 54 / 1e-07 RNA-binding KH domain-containing protein (.1) AT1G14170 49 / 7e-06 RNA-binding KH domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012725 [exp] 836 / 0 AT2G22600 216 / 1e-61 RNA-binding KH domain-containing protein (.1) Lus10035640 [exp] 103 / 4e-23 AT5G64390 337 / 8e-104 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10010754 [exp] 92 / 3e-19 AT5G64390 311 / 5e-94 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10034831 [exp] 91 / 5e-19 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10005232 [exp] 64 / 1e-10 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10007236 [exp] 63 / 4e-10 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10030689 [exp] 61 / 9e-10 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 62 / 1e-09 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10028237 [exp] 59 / 5e-09 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G012000 [exp] 188 / 3e-53 AT2G22600 325 / 3e-104 RNA-binding KH domain-containing protein (.1) Potri.007G011900 [exp] 171 / 2e-45 AT2G22600 295 / 2e-87 RNA-binding KH domain-containing protein (.1) Potri.017G042500 [exp] 113 / 3e-26 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.007G116300 [exp] 105 / 6e-24 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.010G251700 [exp] 82 / 3e-16 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.004G123400 [exp] 64 / 9e-11 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 64 / 1e-10 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 64 / 2e-10 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 64 / 2e-10 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 62 / 4e-10 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10002662 pacid=23168804 polypeptide=Lus10002662 locus=Lus10002662.g ID=Lus10002662.BGIv1.0 annot-version=v1.0 ATGATCACACAGATTACTGGTTCAGTTGTATCTGTAAAGAGAGCGATTATTGTAGTTACTGGCTGCCTTCAAAGCTTTCTTCAACGCGAGAGAGATCAAA TTCCATTGACAGTGAGACCTATTGAGAGGAGATCATCTTCGACGACATCTCATGACCAGCATTTGCAGTTCTGTCCACATCTTAGTTCAATATTGACACC ATCTGCTGATACCGGTTTCCCATTGAGCAATGGCAAGGACGAAATCTCGAAAGATGCAAAAGGTGATAAGGAGGAAGTATCAATCAGGCTGCTTGTTTCA GAAAGTGCAGCTGGATGCATAATTGGCAGAGCAGGGACTGTAGTCAAGTCTCTGCAGAATCAGACTGGTGCATCCATCCGAGTTGTACCTTTGAGGACTA GATTCGGGGAGAGGGTAGTCACTGTATCGGCTTTGGAGATAAGTTATCTCAACGAGAAAACGAGGTACTCTCCTGCACAGACTGCTGCCCTTCTAGTCTT TGGTAGATCTATTGAGAATGATTTTGAAAAGGCACGTTCATCAGGCTCCATTGAAGGCACTAATGTATCTGCGAGGCTACTAGTTGATAAGGTCTACATC CGTTGCCTCGCCAGTAGCGGTGTGATTGGTGCTGAAGTTACTAAAGGTGCTGCTTTCAAAGTACATCATTTGGAGGATAATTACATCAGAGACGATGTTA TTCTAGAGATTACTGGAGAGTATAAAAATGTTACAAACACTCTTACACAAGTAGTTAGCAAACTAAGGGAAAATGTCTTTGCAAGTAACATGCTCGAGGT AGCAAGCTCTAGTAGCTCTACCGGAAGAGTGACGGATGCTACTACTCCTACATTGTTACAATCTAGTCGAAGTGTCGAATCTAGTCAGCGTGGTTCCTGC GAAAGCATAGATGAGCAACCAGGAGGAGGAGCGACTGGAATCATAGACTCTTCTGACGGAAATGGCATGGCTTCCCCGAGCCAGGTCTCGGAAATAGAGA GATACCTACGCTTTCTTTTGCCCAGGCAAGGGGTCAAGGTGGCAGAATCCAAGGTTCCTGAAGGAGGAGGATCAAGAGAGACGAAACCTCCTTTGTTTAC TAATGGATTTGGTAAATCTGCTGCAGCAGTGGGAGGAAACGCGGACCGTCAACTTGGACTGTTTAATTTCAAACGCTCTTCTTTACCAGTATTCCAGCCA GAAAGTGGGAAGCACTCTACTACATTGAAATCTGGTGCAGAGCATGAGGAAAAAGCTTACAACTCAAGTAATTGCAGAAAGAAACCGGCTTCGGAGAAGA AAACTATAGAAGTCACAATATCTGCAGAAGTTATTGATGCTGTGTATGGTAAAGATGGAAGCAATCTGGATAAAATTAAAAAGATTTCAGGGGCGAAAGT AGTAGTGGTCGATGAATCTGGTGGTGGGAAGCGGGAGGAGGTGAAGATTATGATATCGGGGACAGCTGATGAAGCCAAAGAGGCACAGAGCTTACTTCAA GCCTCTATCCTACGTGGTGGTCACTCCCACTGA
AA sequence Show only first row Show all	>Lus10002662 pacid=23168804 polypeptide=Lus10002662 locus=Lus10002662.g ID=Lus10002662.BGIv1.0 annot-version=v1.0 MITQITGSVVSVKRAIIVVTGCLQSFLQRERDQIPLTVRPIERRSSSTTSHDQHLQFCPHLSSILTPSADTGFPLSNGKDEISKDAKGDKEEVSIRLLVS ESAAGCIIGRAGTVVKSLQNQTGASIRVVPLRTRFGERVVTVSALEISYLNEKTRYSPAQTAALLVFGRSIENDFEKARSSGSIEGTNVSARLLVDKVYI RCLASSGVIGAEVTKGAAFKVHHLEDNYIRDDVILEITGEYKNVTNTLTQVVSKLRENVFASNMLEVASSSSSTGRVTDATTPTLLQSSRSVESSQRGSC ESIDEQPGGGATGIIDSSDGNGMASPSQVSEIERYLRFLLPRQGVKVAESKVPEGGGSRETKPPLFTNGFGKSAAAVGGNADRQLGLFNFKRSSLPVFQP ESGKHSTTLKSGAEHEEKAYNSSNCRKKPASEKKTIEVTISAEVIDAVYGKDGSNLDKIKKISGAKVVVVDESGGGKREEVKIMISGTADEAKEAQSLLQ ASILRGGHSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22600			RNA-binding KH domain-containi...		Lus10002662 [exp]	0	1
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	2.2	0.8279
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	2.4	0.8199
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10019350 [exp]	2.6	0.8008
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	3.2	0.8235
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	3.2	0.8169
AT1G01920			SET domain-containing protein ...		Lus10016435 [exp]	3.3	0.7765
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10022539 [exp]	5.5	0.8017
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10014161 [exp]	5.8	0.7092
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	6.6	0.8176
AT4G04880			adenosine/AMP deaminase family...		Lus10006768 [exp]	9.9	0.6573

Compare expression of checked genes

Lus10002662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.