Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38040 653 / 0 Exostosin family protein (.1) AT4G16745 269 / 5e-85 Exostosin family protein (.1.2) AT5G11610 265 / 3e-83 Exostosin family protein (.1.2) AT5G03795 253 / 8e-79 Exostosin family protein (.1) AT3G07620 244 / 2e-76 Exostosin family protein (.1) AT4G32790 238 / 3e-72 Exostosin family protein (.1) AT5G25820 236 / 3e-71 Exostosin family protein (.1) AT5G11130 232 / 3e-71 Exostosin family protein (.1) AT5G25310 227 / 2e-69 Exostosin family protein (.1) AT5G19670 226 / 1e-67 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012723 [exp] 800 / 0 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 258 / 2e-80 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 253 / 3e-78 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 244 / 2e-77 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10008751 [exp] 246 / 3e-76 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 245 / 9e-76 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 241 / 3e-73 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 236 / 3e-73 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10000608 [exp] 240 / 6e-73 AT4G32790 630 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G058400 [exp] 670 / 0 AT4G38040 649 / 0.0 Exostosin family protein (.1) Potri.005G147500 [exp] 665 / 0 AT4G38040 653 / 0.0 Exostosin family protein (.1) Potri.007G117800 [exp] 387 / 9e-133 AT4G38040 385 / 4e-132 Exostosin family protein (.1) Potri.015G087900 [exp] 379 / 2e-129 AT4G38040 352 / 8e-119 Exostosin family protein (.1) Potri.007G116800 [exp] 348 / 3e-117 AT4G38040 333 / 4e-111 Exostosin family protein (.1) Potri.007G117600 [exp] 340 / 1e-114 AT4G38040 341 / 5e-115 Exostosin family protein (.1) Potri.019G036500 [exp] 276 / 1e-88 AT4G38040 275 / 9e-88 Exostosin family protein (.1) Potri.003G079000 [exp] 259 / 6e-81 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.006G118000 [exp] 252 / 8e-79 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 249 / 8e-76 AT5G25820 635 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10002664 pacid=23168795 polypeptide=Lus10002664 locus=Lus10002664.g ID=Lus10002664.BGIv1.0 annot-version=v1.0 ATGTCGTCCGGAAAGTTTCAGCAACAATCCATGCTTAGTCTCAAAGGCTCCCTCCTCACTCTAGCATTCATAACCTCCTTCTACCTCATTTACCTCTCCC TTAACTCCCTCCACTCCTCACCTTCCCCCTCAGCTCCCTCTGTGATATCAGCCGCCGAATCAGGGAAGCGAATCGTTCGTTCCGAGACAGAGGATACTTT CGCCAACGATGGCGAGGAGATAACGGATCTGTACCATTTCCCGGAGATATTCAGGCTGAACTACGCGGCGATGGAGGAGAATTTCAAGGTGTATATCTAC CCTGACGGCGATCCGAACACTTTCTATCAGACTCCGAGGAAATTGACTGGGAAGTACGCGAGCGAGGGCTACTTCTTCCAGAATATCAGAGAGAGTAAGT TCCGGACTGAGGATCCGGATCAGGCTCACCTCTTCTTTATCCCGATTTCGTGTCACAAGATGAGGGGCAAGGGTACATCCTACGAAAACATGACCATCAT TGTTCAGAATTATGTGGACAGCTTGATAGTCAAGTATCCTTACTGGAACAGAACTCTTGGTGCAGATCACTTTTTTGTAACGTGCCATGATGTCGGTGTA AGGGCAACTGAAGGTGTTCCATTTTTAGTGAAAAATGCAATCCGAGCAGTTTGCTCCCCTAGTTATGACGTTGGATTCATTCCACACAAAGATGTTGCAC TTCCTCAGATCCTCCAGCCATTTGCCCTTCCAGCTGGAGGCAATGACGCGGAAAACAGGACTACTCTTGGGTTTTGGGCTGGCCATAGGAACTCTAAAAT TAGGGTTATCTTGGCAAGAGTTTGGGAAAATGACACAGAGCTTGATATTTCAAACAACAGAATAAGCAGAGCTACTGGACATCTAGTGTATCAGAAAAGA TTTTACAAGACTAAGTTCTGCATATGCCCTGGTGGTTCTCAGGTCAACAGTGCACGCATAACCGACTCAATCCACTATGGCTGTGTCCCTGTGATCTTAT CAAACTACTACGACTTGCCATTCAACGACATCATAGATTGGAACAAATTCGCCGTTGTACTCAAGGAGAAAGACGTGTATAACCTCAAGCAGATCCTCAA AGACATACCGGACGAACAGTTTGTTGAGTTGAATCAAAACGTAGCCAAGGTACAAAAGCACTTCCAGTGGAACTCTCCGCCGATCAAGTACGACGCTTTC CACATGGTGATGTACGATCTCTGGCTGCGTCGCCATGTCATCCGATACTAA
AA sequence Show only first row Show all	>Lus10002664 pacid=23168795 polypeptide=Lus10002664 locus=Lus10002664.g ID=Lus10002664.BGIv1.0 annot-version=v1.0 MSSGKFQQQSMLSLKGSLLTLAFITSFYLIYLSLNSLHSSPSPSAPSVISAAESGKRIVRSETEDTFANDGEEITDLYHFPEIFRLNYAAMEENFKVYIY PDGDPNTFYQTPRKLTGKYASEGYFFQNIRESKFRTEDPDQAHLFFIPISCHKMRGKGTSYENMTIIVQNYVDSLIVKYPYWNRTLGADHFFVTCHDVGV RATEGVPFLVKNAIRAVCSPSYDVGFIPHKDVALPQILQPFALPAGGNDAENRTTLGFWAGHRNSKIRVILARVWENDTELDISNNRISRATGHLVYQKR FYKTKFCICPGGSQVNSARITDSIHYGCVPVILSNYYDLPFNDIIDWNKFAVVLKEKDVYNLKQILKDIPDEQFVELNQNVAKVQKHFQWNSPPIKYDAF HMVMYDLWLRRHVIRY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38040			Exostosin family protein (.1)		Lus10002664 [exp]	0	1
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001385 [exp]	1.0	0.9202
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10028548 [exp]	1.7	0.8915
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022988 [exp]	4.9	0.8802
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001386 [exp]	6.9	0.8679
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	7.1	0.9055
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10000679 [exp]	8.4	0.8835
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10011846 [exp]	12.0	0.8606
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10028428 [exp]	12.7	0.8507
AT4G31250			Leucine-rich repeat protein ki...		Lus10020183 [exp]	13.2	0.8500
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10028658 [exp]	14.4	0.8535

Compare expression of checked genes

Lus10002664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.