Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80570 630 / 0 RNI-like superfamily protein (.1.2.3) AT4G15475 76 / 2e-14 F-box/RNI-like superfamily protein (.1) AT5G25350 60 / 2e-09 EBF2 EIN3-binding F box protein 2 (.1) AT5G23340 56 / 4e-08 RNI-like superfamily protein (.1) AT5G27920 54 / 1e-07 F-box family protein (.1) AT1G21410 52 / 3e-07 SKP2A F-box/RNI-like superfamily protein (.1) AT1G47056 52 / 5e-07 VFB1 VIER F-box proteine 1 (.1) AT2G25490 52 / 8e-07 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G67250 51 / 9e-07 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT3G58530 49 / 6e-06 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012722 [exp] 514 / 0 AT1G80570 388 / 2e-134 RNI-like superfamily protein (.1.2.3) Lus10012721 [exp] 295 / 2e-99 AT1G80570 239 / 7e-78 RNI-like superfamily protein (.1.2.3) Lus10012764 [exp] 80 / 2e-15 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002913 [exp] 73 / 2e-13 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 71 / 6e-13 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 70 / 2e-12 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 69 / 3e-12 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10034013 [exp] 55 / 2e-07 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10040998 [exp] 54 / 2e-07 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053400 [exp] 738 / 0 AT1G80570 699 / 0.0 RNI-like superfamily protein (.1.2.3) Potri.006G254100 [exp] 70 / 2e-12 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 64 / 8e-11 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 62 / 5e-10 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G088800 [exp] 58 / 5e-09 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 58 / 8e-09 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 55 / 7e-08 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 55 / 1e-07 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 54 / 2e-07 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.019G123400 [exp] 54 / 2e-07 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002665 pacid=23168807 polypeptide=Lus10002665 locus=Lus10002665.g ID=Lus10002665.BGIv1.0 annot-version=v1.0 ATGGATATTCTACCGGACCAGTTGGTTTGGGAGATCTTAACCAGAATCAAGAAAACTTCACACAGAAACCACATCTCCTTGGCATGTAAGCGACTACACG ATCTAGACCGAGAAGAGAGGCAATCTCTCCGAGTCGGTTGCGGATTACACCCCGCCAATCGAGCCCTTACATCTCTCTGCAACAGATTCCCAAACTTGCA GAAAGTGGAGATTACATACGCTGGTTGGATGTCCAAGCTAGGGAGACAATTAGACGATCACGGGCTTTCAGTTCTCGCCACCAACTGCACTTCGTTGACA GATCTCACCTTAAGTTTCTGCACCTTCATCACCGACGTCGGTCTCCGTTGCTTAGCTTCTTGCTCCAAGCTTTCCTCCCTGAAGCTGAACTTCACACCGA GGATCACCGGTTGCGGTGTTTTATCCGTTGTTGTAGGCTGCAAGAACTTGACGATTCTGTGTCTTATCCGGTGCCTTAATGTAACTAGCGTCGAGTGGTT GGAGTACCTCGGGAGGCTCGAATCGCTCGAAGAGCTATCAATCAAGAACTGTCGAGCTATCGGGGAAGGCGATTTGATGAAGCTAGGAGGTAGTTGGAGA AATCTGAAGAGATTACAGTTCGAGGTGGATGCGAATTACCGATACATGAAGGTTTACGACCGGCTTGCAGTCGATCAATGGCAAAGGCAATCCGTACCAT GTGAGTCGATGTTAGAGCTTAGCTTGGTGAACTGCATCATCAGTCCTGGTAAAGGGCTGGCTTGTGTTCTGGGGAAATGCAAGAACTTGGAGAAGATCCA TTTGGACATGTGTGTCGGCGTAAGGGATTCGGATATCGTCAACTTAGCAAAGGAATCGACTAATCTCCGATCACTCTCCCTCCGAGTGCCCTCCGATTTC TCGTTACCGCTTCTGATGGGGAACCCGTTACGATTGACCGACAAGAGTCTGAAGGCAGTGGCAGAGAATTGCCCGATGCTGGAATCGGTTCGGTTATCCT TCTCCGATGGAGAGTATCCCTCGTTCTCATCCTTTACACTGGATGGGATACTCGAACTGGTCCGTATGTGTCCGATTCGGGTGCTAGCTCTCGACCATGT GCATTGCTTCAACGATGCCGGGATGGAATCACTGTGTTTGGCGCAGTGGCTCGAGAAGTTGGAGCTTGTGGGTTGCCATGAGGTGACTGATGAAGGGATG CAGCTTGTTACTCAGTTCCCTCGTCTGTGTGGATTGCTGTTAAGGAAGTGTTTGGGGATTACGAATGATGGGTTGAGTCCTCTTGTTGGATCGTACAAGC TGGAATCCTTGGCCGTTGAGGATTGTCCTCAGATTTCTGAGAGGGCCATGAGTGGTGCTGCAAAGTCTGTGTCTTTCCGCCAGGACTTGTCCTGGATGTA CTGA
AA sequence Show only first row Show all	>Lus10002665 pacid=23168807 polypeptide=Lus10002665 locus=Lus10002665.g ID=Lus10002665.BGIv1.0 annot-version=v1.0 MDILPDQLVWEILTRIKKTSHRNHISLACKRLHDLDREERQSLRVGCGLHPANRALTSLCNRFPNLQKVEITYAGWMSKLGRQLDDHGLSVLATNCTSLT DLTLSFCTFITDVGLRCLASCSKLSSLKLNFTPRITGCGVLSVVVGCKNLTILCLIRCLNVTSVEWLEYLGRLESLEELSIKNCRAIGEGDLMKLGGSWR NLKRLQFEVDANYRYMKVYDRLAVDQWQRQSVPCESMLELSLVNCIISPGKGLACVLGKCKNLEKIHLDMCVGVRDSDIVNLAKESTNLRSLSLRVPSDF SLPLLMGNPLRLTDKSLKAVAENCPMLESVRLSFSDGEYPSFSSFTLDGILELVRMCPIRVLALDHVHCFNDAGMESLCLAQWLEKLELVGCHEVTDEGM QLVTQFPRLCGLLLRKCLGITNDGLSPLVGSYKLESLAVEDCPQISERAMSGAAKSVSFRQDLSWMY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80570			RNI-like superfamily protein (...		Lus10002665 [exp]	0	1
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10010994 [exp]	2.2	0.8975
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	4.9	0.8973
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10010149 [exp]	7.2	0.9152
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10014991 [exp]	7.2	0.8843
AT4G17250			unknown protein		Lus10028936 [exp]	7.5	0.8842
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10007765 [exp]	9.8	0.8936
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10015237 [exp]	9.9	0.8951
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	12.3	0.9012
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	12.5	0.9102
AT3G30390			Transmembrane amino acid trans...		Lus10031964 [exp]	13.6	0.9143

Compare expression of checked genes

Lus10002665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.