Gene [FLAX] | FIBexDB

Lus10002666 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TAIR10 short description
AT4G38030	92 / 1e-22	Rhamnogalacturonate lyase family protein (.1)
AT1G65210	86 / 2e-21	Galactose-binding protein (.1)
AT2G22620	82 / 7e-19	Rhamnogalacturonate lyase family protein (.1.2)
AT1G09910	76 / 1e-16	Rhamnogalacturonate lyase family protein (.1)
AT4G37950	74 / 4e-16	Rhamnogalacturonate lyase family protein (.1)
AT4G24430	74 / 5e-16	Rhamnogalacturonate lyase family protein (.1)
AT1G09880	73 / 6e-16	Rhamnogalacturonate lyase family protein (.1)
AT1G09890	72 / 2e-15	Rhamnogalacturonate lyase family protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10012720 [exp]	164 / 4e-48	AT2G22620	706 / 0.0	Rhamnogalacturonate lyase family protein (.1.2)
Lus10010739 [exp]	131 / 3e-38	AT4G24430	298 / 1e-96	Rhamnogalacturonate lyase family protein (.1)
Lus10010738 [exp]	112 / 5e-30	AT4G38030	411 / 1e-138	Rhamnogalacturonate lyase family protein (.1)
Lus10023106 [exp]	104 / 7e-27	AT2G22620	611 / 0.0	Rhamnogalacturonate lyase family protein (.1.2)
Lus10029552 [exp]	87 / 1e-20	AT2G22620	740 / 0.0	Rhamnogalacturonate lyase family protein (.1.2)
Lus10039627 [exp]	87 / 2e-20	AT2G22620	785 / 0.0	Rhamnogalacturonate lyase family protein (.1.2)
Lus10004281 [exp]	81 / 2e-18	AT2G22620	818 / 0.0	Rhamnogalacturonate lyase family protein (.1.2)
Lus10019231 [exp]	78 / 2e-17	AT2G22620	800 / 0.0	Rhamnogalacturonate lyase family protein (.1.2)
Lus10005979 [exp]	77 / 4e-17	AT1G09880	767 / 0.0	Rhamnogalacturonate lyase family protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.014G004500 [exp]	90 / 9e-22	AT2G22620	807 / 0.0	Rhamnogalacturonate lyase family protein (.1.2)
Potri.006G218500 [exp]	89 / 2e-21	AT2G22620	842 / 0.0	Rhamnogalacturonate lyase family protein (.1.2)
Potri.011G006200 [exp]	74 / 5e-16	AT1G09910	663 / 0.0	Rhamnogalacturonate lyase family protein (.1)
Potri.005G151500 [exp]	72 / 2e-15	AT1G09910	979 / 0.0	Rhamnogalacturonate lyase family protein (.1)
Potri.002G110200 [exp]	71 / 4e-15	AT1G09890	892 / 0.0	Rhamnogalacturonate lyase family protein (.1)
Potri.002G110100 [exp]	71 / 6e-15	AT1G09890	810 / 0.0	Rhamnogalacturonate lyase family protein (.1)
Potri.002G110000 [exp]	65 / 5e-13	AT1G09890	968 / 0.0	Rhamnogalacturonate lyase family protein (.1)
Potri.002G110300 [exp]	61 / 1e-11	AT4G24430	929 / 0.0	Rhamnogalacturonate lyase family protein (.1)

PFAM info

Representative CDS sequence

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>Lus10002666 pacid=23168812 polypeptide=Lus10002666 locus=Lus10002666.g ID=Lus10002666.BGIv1.0 annot-version=v1.0

ATGAAAATCAAGTGGAAGTGTCTTTCAGCAGAGAATGGGACTCTTCTAACAAAGGCCAAGTACCACTTAATGTGGACAAAAGAATCTGGGCAGAAAAATT

ACGTACCAACCCCGTGGCAGATTGTTTTCGAGCTTCCTGACGTATCCCCAACAGGAAATTACAGTCTTCAACTAGCATTGGCTGCGGCAGATGAAACAAA

CACATTCATTTATGTAAACAACTTGAACGCCAAAGCTCCGGCGTTGATGACACAGAGAGTAGGAAAGGATAAGGCGATTGCAAGACATGGGATTCATGGA

GTTTACAGGTTCTTCAGCGCAGGTTTGCCTTCAAATCTGTTCGTAAAGGGTAGTCGGTCACAGACGCCCCCTATCCCTACTCCGCCGCAGCGAGAATTGG

ATGAAAAATGA

AA sequence

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>Lus10002666 pacid=23168812 polypeptide=Lus10002666 locus=Lus10002666.g ID=Lus10002666.BGIv1.0 annot-version=v1.0

MKIKWKCLSAENGTLLTKAKYHLMWTKESGQKNYVPTPWQIVFELPDVSPTGNYSLQLALAAADETNTFIYVNNLNAKAPALMTQRVGKDKAIARHGIHG

VYRFFSAGLPSNLFVKGSRSQTPPIPTPPQRELDEK

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38030			Rhamnogalacturonate lyase fami...		Lus10002666 [exp]	0	1

Lus10002666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.