Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 346 / 5e-118 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 293 / 3e-97 O-methyltransferase family protein (.1) AT1G21130 281 / 1e-92 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21110 281 / 2e-92 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT1G21100 279 / 1e-91 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21120 278 / 2e-91 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1) AT1G51990 275 / 4e-90 O-methyltransferase family protein (.1.2) AT1G77530 270 / 5e-88 O-methyltransferase family protein (.1) AT1G33030 268 / 2e-87 O-methyltransferase family protein (.1) AT1G63140 267 / 5e-87 O-methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005133 [exp] 602 / 0 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002669 [exp] 519 / 0 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10006146 [exp] 437 / 6e-154 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10015576 [exp] 347 / 2e-118 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10032929 [exp] 345 / 1e-117 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10030188 [exp] 318 / 7e-109 AT5G54160 213 / 9e-68 O-methyltransferase 1 (.1) Lus10009442 [exp] 243 / 8e-78 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10014825 [exp] 219 / 2e-68 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1) Lus10002668 [exp] 196 / 5e-61 AT1G51990 102 / 2e-25 O-methyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G106600 [exp] 437 / 1e-153 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 412 / 5e-144 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 412 / 5e-144 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 411 / 9e-144 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 410 / 2e-143 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 406 / 5e-142 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 365 / 1e-125 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 365 / 2e-125 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.014G106500 [exp] 344 / 7e-117 AT5G54160 349 / 8e-119 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 300 / 3e-100 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10002667 pacid=23159072 polypeptide=Lus10002667 locus=Lus10002667.g ID=Lus10002667.BGIv1.0 annot-version=v1.0 ATGGCAGCGACCCAAAACGTCACCGTACCAAAAGAAGATCAAAATGAGAGCTATCTATACGCAATGCAACTGGTAATGGGGTCAGTGGTTCCTATGACAC TGCAGGCTGCCAACGAGCTCGGAATCTTTAAAGTCATGGCCGCTGGTGCGAAACTGAGCGCCTCTGAAATCGTGTCCAAGCTGGATTCGATGACGAATCC AGATGCACCGGTCATGGTTGACCGGATTCTTAGGCTAATGGGTAGTCATTCGATTGTTGATTGCACTTTGGAGGACGATGGGTCCGGCCAGAAACAGAGG AAGTATGAGTTGAACTCTGTTTCTAAGTACTTTGTGAAGAATGAGGATGGTCTCTCTTTGGTTCCCTTGATGTCCTTGCTTCAAGATAAGGTCTTCTTGG ACAGCTGGCCCGAGCTGAAGAATGCGGTGTTGGAAGGAGGAGTTCCATTTGACAGAGTCCATGGTGCTAACACTTTCGAGTATCCGAGACTTAATGAGAG GTTCAATCAAGTTTTTAACGCAGCAATGTACGACCATTCGACCATGGTAATTAAACAGGTTCTCAATTCTTACAAAGGATTCGAACCATTGAACCTTGTC GTGGATGTCGGAGGTGGATTAGGACACACCATAAAGGCCATTACTTCCAAGTACCCACATATCAAAGGCATCAACTTTGACTTGGCCCATGTTATAAACC AGGCTCCTAATATTCCTGGTGTGGAGAATGTAGCTGGGGATATGTTTAAATGTGTTCCTCAAGGAGATGCCATTTTTATGAAGTGGATACTCCATGATTG GAGCGACGTCCATTGTTTGACACTATTGAAGAACTGTTATAAGGCAACTCCGACACAGGGGAAGGTAATAGTTATGGATGCGGTGGCTCCGATAATGGCG GAGACGAATGCGAGCTCAAAATTAACCGCTCAAATTGATATGGTAATGCTGACACAAGATCCTGGAGGGAAAGAAAGAACAAAAGACGAGTTCATGGCTC TAGCAATCGGAGCTGGTTTCAAAGGGATCCGATTTGAGTTACATGTTTGTAACTATTGGGTGATGGAGTTCTACAAATGA
AA sequence Show only first row Show all	>Lus10002667 pacid=23159072 polypeptide=Lus10002667 locus=Lus10002667.g ID=Lus10002667.BGIv1.0 annot-version=v1.0 MAATQNVTVPKEDQNESYLYAMQLVMGSVVPMTLQAANELGIFKVMAAGAKLSASEIVSKLDSMTNPDAPVMVDRILRLMGSHSIVDCTLEDDGSGQKQR KYELNSVSKYFVKNEDGLSLVPLMSLLQDKVFLDSWPELKNAVLEGGVPFDRVHGANTFEYPRLNERFNQVFNAAMYDHSTMVIKQVLNSYKGFEPLNLV VDVGGGLGHTIKAITSKYPHIKGINFDLAHVINQAPNIPGVENVAGDMFKCVPQGDAIFMKWILHDWSDVHCLTLLKNCYKATPTQGKVIVMDAVAPIMA ETNASSKLTAQIDMVMLTQDPGGKERTKDEFMALAIGAGFKGIRFELHVCNYWVMEFYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10002667 [exp]	0	1
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023293 [exp]	1.0	0.9484
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004285 [exp]	1.4	0.8995
					Lus10024617 [exp]	1.7	0.8694
AT1G80530			Major facilitator superfamily ...		Lus10030112 [exp]	8.4	0.6064
					Lus10030116 [exp]	10.4	0.7362
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10040906 [exp]	11.5	0.8028
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10005065 [exp]	14.2	0.6718
AT3G59850			Pectin lyase-like superfamily ...		Lus10002125 [exp]	20.6	0.7683
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	21.2	0.7329
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	22.6	0.7329

Compare expression of checked genes

Lus10002667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.