Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 101 / 4e-25 ATOMT1 O-methyltransferase 1 (.1) AT1G33030 94 / 2e-22 O-methyltransferase family protein (.1) AT1G21110 92 / 8e-22 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT1G21100 92 / 1e-21 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G51990 92 / 1e-21 O-methyltransferase family protein (.1.2) AT1G21130 91 / 2e-21 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21120 89 / 2e-20 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1) AT1G76790 88 / 3e-20 IGMT5 indole glucosinolate O-methyltransferase 5, O-methyltransferase family protein (.1) AT1G62900 83 / 2e-19 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77520 85 / 5e-19 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002667 [exp] 195 / 6e-61 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10005133 [exp] 183 / 2e-56 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002669 [exp] 181 / 3e-55 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10030188 [exp] 142 / 2e-41 AT5G54160 213 / 9e-68 O-methyltransferase 1 (.1) Lus10006146 [exp] 135 / 9e-38 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10030187 [exp] 97 / 2e-26 AT1G21130 55 / 1e-10 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) Lus10015576 [exp] 101 / 5e-25 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10032929 [exp] 100 / 7e-25 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10009442 [exp] 83 / 2e-18 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G180433 [exp] 142 / 2e-40 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 141 / 2e-40 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 141 / 2e-40 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 141 / 2e-40 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 137 / 4e-39 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 134 / 2e-37 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.001G451100 [exp] 125 / 4e-34 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 114 / 4e-30 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.013G017210 [exp] 111 / 7e-30 AT5G54160 237 / 5e-77 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 111 / 8e-29 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10002668 pacid=23159069 polypeptide=Lus10002668 locus=Lus10002668.g ID=Lus10002668.BGIv1.0 annot-version=v1.0 ATGGCAGCTGTAAACAGTGCGCCGGATGACCAGGAGACCTTTACATACGCTATGCAGTTGGTGATGGGCTCTGTGGTTCCCATGACATTGCACGCTGCCA ACGAACTCGGAATCTTCGAGGCCATAGCTGCAGAGGGTGATGGCGCAAAACTCAGCGCTTCTGAGATCGTGTCCAAGTTGGATTCGGTGACGAATCCAGA TGCACCGGTCATGGTGGACAGGATTCTTAGGCTATTGGGTAGCCATTCAATCGTCGATTGTACGCTGGATGTGGACGATGAGTCCAGCCAGAAGCAGAGG AAGTATGGATTGAACTCTGTTTCTAAGTACTTTGTGAAGGATGAAGATGGTGTCTCTTTGGCTCCTATGATGTCCCTGATTCAAGACAAGCTGTTGATAA TTCATAACTGGAGTGATGCACATTGTATGGTGCTATTGAAGAATTGTTATAAAGCGATTCCGGAGGATGGAAAGGTAATAGTTATGGATATGGTGGCTCC AAATACGCCCGAGGCGACGACGAGCTCAAAGTTAACTGCTCAACTCGATTTGTTGATGATGGCGGTAAATACTGGAGGGAATGAACGAACGAGAGATGAG TTGATGGTGTTAGCAACTGGAGCTGGGTTTAAAGGGATTCAATTTGTGTTACTTGTTTGTAACTATTGGATCATGGAGTTCTACAAATGA
AA sequence Show only first row Show all	>Lus10002668 pacid=23159069 polypeptide=Lus10002668 locus=Lus10002668.g ID=Lus10002668.BGIv1.0 annot-version=v1.0 MAAVNSAPDDQETFTYAMQLVMGSVVPMTLHAANELGIFEAIAAEGDGAKLSASEIVSKLDSVTNPDAPVMVDRILRLLGSHSIVDCTLDVDDESSQKQR KYGLNSVSKYFVKDEDGVSLAPMMSLIQDKLLIIHNWSDAHCMVLLKNCYKAIPEDGKVIVMDMVAPNTPEATTSSKLTAQLDLLMMAVNTGGNERTRDE LMVLATGAGFKGIQFVLLVCNYWIMEFYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	0	1
AT3G26880			Plant self-incompatibility pro...		Lus10038163 [exp]	2.0	0.9253
AT1G66930			Protein kinase superfamily pro...		Lus10026759 [exp]	5.1	0.8722
AT3G04890			Uncharacterized conserved prot...		Lus10015938 [exp]	6.3	0.8910
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10006763 [exp]	6.5	0.9074
AT5G36930			Disease resistance protein (TI...		Lus10007809 [exp]	6.5	0.8936
AT1G17050		SPS2	solanesyl diphosphate synthase...		Lus10042491 [exp]	7.9	0.8912
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	8.7	0.9248
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10009762 [exp]	12.2	0.8893
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10036167 [exp]	12.3	0.8814
AT5G05365			Heavy metal transport/detoxifi...		Lus10040965 [exp]	16.0	0.8952

Compare expression of checked genes

Lus10002668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.