Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26320 108 / 4e-28 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT1G13080 106 / 4e-27 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G53305 102 / 1e-26 CYP71B32 "cytochrome P450, family 71, subfamily B, polypeptide 32", cytochrome P450, family 71, subfamily B, polypeptide 32 (.1) AT3G26200 103 / 4e-26 CYP71B22 "cytochrome P450, family 71, subfamily B, polypeptide 22", cytochrome P450, family 71, subfamily B, polypeptide 22 (.1) AT3G26190 103 / 4e-26 CYP71B21 "cytochrome P450, family 71, subfamily B, polypeptide 21", cytochrome P450, family 71, subfamily B, polypeptide 21 (.1) AT3G53300 102 / 7e-26 CYP71B31 "cytochrome P450, family 71, subfamily B, polypeptide 31", cytochrome P450, family 71, subfamily B, polypeptide 31 (.1) AT3G26210 101 / 2e-25 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G53290 100 / 2e-25 CYP71B30P "cytochrome P450, family 71, subfamily B, polypeptide 30 pseudogene", cytochrome P450, family 71, subfamily B, polypeptide 30 pseudogene (.1) AT3G26300 100 / 3e-25 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT1G13090 100 / 6e-25 CYP71B28 "cytochrome P450, family 71, subfamily B, polypeptide 28", cytochrome P450, family 71, subfamily B, polypeptide 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030189 [exp] 217 / 1e-68 AT5G57260 487 / 3e-169 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10043310 [exp] 103 / 2e-26 AT2G30770 329 / 4e-109 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10023140 [exp] 91 / 9e-22 AT3G26300 457 / 8e-158 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10011499 [exp] 90 / 2e-21 AT3G26300 384 / 3e-130 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10012395 [exp] 88 / 1e-20 AT4G31500 492 / 4e-171 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10024315 [exp] 85 / 2e-19 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10041667 [exp] 85 / 2e-19 AT3G26300 375 / 3e-125 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10010066 [exp] 84 / 2e-19 AT4G31500 487 / 3e-169 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034502 [exp] 83 / 5e-19 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G049200 [exp] 150 / 1e-43 AT3G26320 435 / 1e-149 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184400 [exp] 145 / 2e-41 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184900 [exp] 144 / 3e-41 AT3G26320 529 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184000 [exp] 143 / 7e-41 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.005G236102 [exp] 87 / 6e-21 AT4G31500 242 / 3e-76 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.007G082900 [exp] 86 / 9e-20 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 86 / 9e-20 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G085600 [exp] 85 / 2e-19 AT3G48270 378 / 1e-126 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.002G026300 [exp] 84 / 4e-19 AT4G31500 474 / 4e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.007G084800 [exp] 83 / 5e-19 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10002670 pacid=23159056 polypeptide=Lus10002670 locus=Lus10002670.g ID=Lus10002670.BGIv1.0 annot-version=v1.0 ATGAAAATCAACGACCTCGCCACGTGCATCAGGCCATCTTTCGATGGAAGCCGGAGGCTGACTTACGGCTACCTGGACGTGGGGTTCTCGCCTTATGCGG AGAACTGGAGGTTCATGAGAAAGATGATCATACTCGAGCTCTTCAGCTTGGAACGGGTCAAGTCGTTCCGGTTCGTTCGAGAGGAAGAAGTTGGGTTTTT GATCGATTCCTTCAGAAATCGATCAAAAACCGGTGTTGTCGATCTCGCTGAGAAATTGTTCGCCTTGACGGCGAACATAACGTTCAGGATGTCCTTTGGT TATAATTACCGCGGGACCGAGTTTGATAAAAACAGGTCTGTAACGCTGTTTTTAAGAGGAATAGAGACATTGACTCTAACCTGGGCAATGACGAGGCTTT TGGCGAATCCCACATCGATGAAGAAAGCACAAGACCAGGTTAGAAACATCGTCGGAGTTGACAAAGGCAGGGTGACAGAAGACGACCTCGAAAAACTCGA ATACCTGAAATGA
AA sequence Show only first row Show all	>Lus10002670 pacid=23159056 polypeptide=Lus10002670 locus=Lus10002670.g ID=Lus10002670.BGIv1.0 annot-version=v1.0 MKINDLATCIRPSFDGSRRLTYGYLDVGFSPYAENWRFMRKMIILELFSLERVKSFRFVREEEVGFLIDSFRNRSKTGVVDLAEKLFALTANITFRMSFG YNYRGTEFDKNRSVTLFLRGIETLTLTWAMTRLLANPTSMKKAQDQVRNIVGVDKGRVTEDDLEKLEYLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13090		CYP71B28	"cytochrome P450, family 71, s...		Lus10002670 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10009937 [exp]	4.6	0.9422
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009468 [exp]	9.8	0.9389
AT1G17860			Kunitz family trypsin and prot...		Lus10007889 [exp]	10.4	0.9238
AT1G17860			Kunitz family trypsin and prot...		Lus10030355 [exp]	11.6	0.9415
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10002671 [exp]	12.0	0.9420
AT1G17860			Kunitz family trypsin and prot...		Lus10013730 [exp]	12.5	0.9441
AT1G17860			Kunitz family trypsin and prot...		Lus10039210 [exp]	12.5	0.9474
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Lus10035670 [exp]	13.0	0.9504
AT1G17860			Kunitz family trypsin and prot...		Lus10022302 [exp]	16.7	0.9466
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10037818 [exp]	17.2	0.9428

Compare expression of checked genes

Lus10002670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.