Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61770 491 / 1e-175 PPAN PETER PAN-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030190 [exp] 619 / 0 AT5G61770 494 / 5e-176 PETER PAN-like protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G204900 [exp] 531 / 0 AT5G61770 491 / 3e-176 PETER PAN-like protein (.1.2.3) Potri.014G129700 [exp] 512 / 0 AT5G61770 521 / 0.0 PETER PAN-like protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF04427 [flax] [poplar] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Lus10002672 pacid=23159067 polypeptide=Lus10002672 locus=Lus10002672.g ID=Lus10002672.BGIv1.0 annot-version=v1.0 ATGAAACAGAAGAGGAAAGTTTTCGTGAAGCCGATTGTGCAAAAGAAGGCGGCGGCAGCCAATGTGGATCATGTATCCGGCGATAAGATTCCAAAGAGCT TTGTGTTTTCCAGAGGGAAGCTGCCTGGCTCTCTAAGGCAGCTTCAGACGGATTTGAGGAAGTTAATGCTTCCATATACAGCTCTTAGTTTAAAGGAGAA GAAGAGGAACAATCTAGGGGACTTCTTGAATGTTGCTGGTCCAATGGGTGTAACACATTTCCTAATGTTGTCCAAGCCAGCGGCTAATCCGTATTTGAAA GTTGCTAGAACTCCTCAAGGGCCGACTGTTACTTTCAAGATAGATGAGTACTCGCTCGCGTCTGATATTATCAAGTCTCAGTTGCACCCTAGATGTCCTC CTGATCTTTTCAAGAACCCCCCTTTGGTTGTTCTTTCTGGATTTGGGTCTGGAGAGCAGCATCTAAAGCTGGTGACTATAATGTTTCAGAATATGTTTCC AGCTATTGACATTAACACCGTGAAGCTGTCTTCTTGCCAAAGAGTTGTCTTACTTAATTACAATAAAGATACGAAACTCATTGACTTTAGGCATTACTCG ATCCGACTCCAACCCGTTGGTGTCTCCCGCCGAATCAGGAAATTCGTGCAGAACCACCAAGTCCCTGATCTTAGGAGTCTCCAAGACGTTAGTGACTTTG TTACAAAGGCCGGTTATGGATCAGAAAGTGAAGGGGATGAGGAAGCCGCTACTGTTACGTTGCCTTGTGATCTCGGTAGAGTAAACCGGGTTGCTTCAAA GAGCGCTGTCAAGCTACAGGAAATCGGTCCGAGAATGACCCTTCAGCTTGTTAGAGTCGAGGAGGGATTATGCACAGGAATCGTCATCTTCGATGCATTT GGTAATTCCTCTAACAACAACAGTAAAACTGGGAAAGAGAATCAGAAGAACCAAGGCGATGGCAAGGATAACAAAGACGAAGATTTAGTTGGTGACGAGG ATGAGGGTGAAGTCAGCGAAGATAATGAGCAAGCTGCCTGA
AA sequence Show only first row Show all	>Lus10002672 pacid=23159067 polypeptide=Lus10002672 locus=Lus10002672.g ID=Lus10002672.BGIv1.0 annot-version=v1.0 MKQKRKVFVKPIVQKKAAAANVDHVSGDKIPKSFVFSRGKLPGSLRQLQTDLRKLMLPYTALSLKEKKRNNLGDFLNVAGPMGVTHFLMLSKPAANPYLK VARTPQGPTVTFKIDEYSLASDIIKSQLHPRCPPDLFKNPPLVVLSGFGSGEQHLKLVTIMFQNMFPAIDINTVKLSSCQRVVLLNYNKDTKLIDFRHYS IRLQPVGVSRRIRKFVQNHQVPDLRSLQDVSDFVTKAGYGSESEGDEEAATVTLPCDLGRVNRVASKSAVKLQEIGPRMTLQLVRVEEGLCTGIVIFDAF GNSSNNNSKTGKENQKNQGDGKDNKDEDLVGDEDEGEVSEDNEQAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10002672 [exp]	0	1
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10013308 [exp]	4.0	0.8822
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10020375 [exp]	4.2	0.8883
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10030190 [exp]	6.5	0.8956
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10007267 [exp]	7.1	0.9055
AT1G30240			unknown protein		Lus10026071 [exp]	11.6	0.8834
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10032635 [exp]	14.5	0.8796
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10041934 [exp]	19.5	0.8705
AT3G06790			plastid developmental protein ...		Lus10016825 [exp]	19.7	0.8840
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	21.0	0.8785
AT1G04945			HIT-type Zinc finger family pr...		Lus10026116 [exp]	21.5	0.8386

Compare expression of checked genes

Lus10002672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.