Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46820 143 / 6e-44 PSI-P, TMP14, PTAC8, PSAP THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) AT1G52220 86 / 8e-22 unknown protein AT4G01150 74 / 5e-17 unknown protein AT4G38100 54 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030191 [exp] 219 / 9e-74 AT2G46820 169 / 4e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Lus10012645 [exp] 72 / 5e-16 AT4G01150 212 / 3e-71 unknown protein Lus10010132 [exp] 72 / 6e-16 AT4G01150 215 / 2e-72 unknown protein Lus10012739 [exp] 60 / 4e-11 AT4G38100 135 / 3e-40 unknown protein Lus10003031 [exp] 52 / 1e-08 AT4G01150 153 / 3e-48 unknown protein Lus10002647 [exp] 52 / 2e-08 AT4G38100 130 / 5e-38 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G106400 [exp] 180 / 2e-58 AT2G46820 154 / 2e-48 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Potri.002G180400 [exp] 169 / 5e-54 AT2G46820 137 / 1e-41 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Potri.001G184700 [exp] 87 / 4e-22 AT1G52220 160 / 3e-51 unknown protein Potri.014G093900 [exp] 72 / 4e-16 AT4G01150 181 / 3e-59 unknown protein Potri.002G166800 [exp] 70 / 2e-15 AT4G01150 188 / 6e-62 unknown protein Potri.003G052200 [exp] 58 / 9e-11 AT1G52220 88 / 2e-22 unknown protein Potri.005G147801 [exp] 54 / 3e-09 AT4G38100 107 / 1e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002673 pacid=23159071 polypeptide=Lus10002673 locus=Lus10002673.g ID=Lus10002673.BGIv1.0 annot-version=v1.0 ATGGCGTCCACTTCCTCAGCCACCTTGTCGATCTCATCAACCATTGTGGACGCAAAGGCTCCTCGCAGCTCAATTGCTTCTTCTTCATCACAATGTGTCA CTCTGCCAACTCTGCCTCCTTCTCCTACTACTGTCCTTTCATCTCTCAAGCCCACTACCTACTGCCGGAAGATTGCTCGAAATGTCATGGCAATGGCGAC AGGGGAAGCTTCGCCAGCTGAGGTTGTGTCGACGACTGAGATGCCTGAGATTGTGAAGACTATTCAAGATGCTTGGGACAAAGTTGAAGACAAGTATGCA GTTTCTTCACTTGGTGTTGCTGCTGCACTAGCAATCTGGAGTTCTTCCGGGATGATCTCGGCAATCGACAGGCTTCCATTGGTGCCTGGAGTTCTTGAGA TCGTTGGCATAAGTTACTCTGGTTGGTTTGCATACAAGAACCTCTTCTACAAACCTGACAGGGAAGCATTGATACAGAAAGTGAAGGACACTTACAAAGA CATAACTGGTAGCAGCTGA
AA sequence Show only first row Show all	>Lus10002673 pacid=23159071 polypeptide=Lus10002673 locus=Lus10002673.g ID=Lus10002673.BGIv1.0 annot-version=v1.0 MASTSSATLSISSTIVDAKAPRSSIASSSSQCVTLPTLPPSPTTVLSSLKPTTYCRKIARNVMAMATGEASPAEVVSTTEMPEIVKTIQDAWDKVEDKYA VSSLGVAAALAIWSSSGMISAIDRLPLVPGVLEIVGISYSGWFAYKNLFYKPDREALIQKVKDTYKDITGSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10002673 [exp]	0	1
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Lus10030191 [exp]	1.0	0.9946
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10013663 [exp]	2.4	0.9748
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10026205 [exp]	2.4	0.9765
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10008747 [exp]	3.5	0.9724
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	3.9	0.9679
AT1G07700			Thioredoxin superfamily protei...		Lus10032343 [exp]	6.2	0.9523
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10027246 [exp]	6.9	0.9541
AT3G14420			Aldolase-type TIM barrel famil...		Lus10013724 [exp]	7.5	0.9399
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Lus10028261 [exp]	8.5	0.9630
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10007627 [exp]	9.2	0.9636

Compare expression of checked genes

Lus10002673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.