Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58810 458 / 2e-161 ATMTPA2, MTP3, MTPA2, ATMTP3 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) AT3G61940 424 / 5e-149 ATMTPA1, MTPA1 Cation efflux family protein (.1) AT2G29410 270 / 1e-87 ATMTPB1, MTPB1 metal tolerance protein B1 (.1) AT2G46800 269 / 5e-87 ATMTP1, ZAT1, ZAT, ATCDF1 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) AT2G04620 70 / 1e-12 Cation efflux family protein (.1) AT1G33020 62 / 4e-10 F-box and associated interaction domains-containing protein (.1) AT3G12100 51 / 8e-07 Cation efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012604 [exp] 323 / 6e-108 AT3G61940 500 / 2e-177 Cation efflux family protein (.1) Lus10030192 [exp] 234 / 3e-77 AT2G46800 221 / 1e-72 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Lus10040744 [exp] 166 / 2e-47 AT2G29410 344 / 1e-116 metal tolerance protein B1 (.1) Lus10016487 [exp] 166 / 3e-47 AT2G29410 345 / 8e-117 metal tolerance protein B1 (.1) Lus10013358 [exp] 79 / 1e-15 AT2G04620 783 / 0.0 Cation efflux family protein (.1) Lus10004102 [exp] 79 / 1e-15 AT2G04620 784 / 0.0 Cation efflux family protein (.1) Lus10004168 [exp] 46 / 3e-05 AT3G12100 511 / 0.0 Cation efflux family protein (.1.2) Lus10000033 [exp] 43 / 0.0002 AT2G47830 186 / 3e-57 Cation efflux family protein (.1.2) Lus10040922 [exp] 43 / 0.0003 AT2G47830 545 / 0.0 Cation efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G106200 [exp] 505 / 7e-180 AT2G46800 277 / 4e-90 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.002G180100 [exp] 486 / 3e-172 AT2G46800 502 / 3e-178 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.001G450900 [exp] 251 / 2e-79 AT2G46800 285 / 3e-92 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.011G150600 [exp] 248 / 1e-78 AT3G58810 281 / 2e-91 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Potri.001G245800 [exp] 157 / 3e-44 AT2G29410 336 / 7e-114 metal tolerance protein B1 (.1) Potri.005G110300 [exp] 81 / 3e-16 AT2G04620 483 / 2e-158 Cation efflux family protein (.1) Potri.016G045200 [exp] 52 / 3e-07 AT3G12100 536 / 0.0 Cation efflux family protein (.1.2) Potri.002G209023 [exp] 42 / 0.0005 AT2G47830 495 / 1e-172 Cation efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10002674 pacid=23159054 polypeptide=Lus10002674 locus=Lus10002674.g ID=Lus10002674.BGIv1.0 annot-version=v1.0 ATGGAAGGCCAGAGTCCAAGACAGGGCCAGAGTATTGAAATAAACGCTGACATCCCTGATAGCAGCAATGTGGGAGGAAGCAAGATATGCGGAGAAGCAC CTTGTGGCTTCTCAGATGCACAGAGCAACTCTGAAGAGGCCAGAGAACGAACAGCTTCAATGAGGAAGCTACTGATGGCAGTCGGATTTTGTGTACTGTT CATGGCTGTTGAAGTATTTGGTGGCATCAAAGCCAACAGTCTGGCGATACTGACGGATGCAGCGCATTTGCTTTCGGATGTTGCAGCATTTGCCATATCC TTGTTTTCTCTCTGGGCTGCTAGCTGGGAGGCCAACCCTCGCCAGTCGTACGGGTTCTTCCGAATCGAGATTCTCGGCGCTTTGGTTTCGATGCAAATCA TATGGCTCCTTACAGGAATCATAGTGTATGAGGCCATCGTTCGGCTCATCTACAACACAAGTGAAGTCGATGGCTTCTTAATGTTTCTGGTTGCTGCGTT CGGTCTTGTGGTCAATATTATAATGGCCGTTTTACTTGGCCATGATCATGGTCACGGCCATGGCCACGATCATGGTCACGATCACAGCCACAGTAACGGT CACGATCACGAAAAAGCTAGCCATCACCATCATCACGATGGCCATGATCATGAACATTTGGAAGAAGGGCATGAAGGTAAACAGCCACTCTTGGACAAGA AGGAGAAGAAGAAGAACATTAACGTCGAAGGAGCATATCTGCACGTGCTGGGGGACTCGATCCAGAGCGTGGGAGTGATGATCGGGGGAGCGATAATATG GTACAAGCCGGAATGGAAGATTGTTGACCTGATATGCACCCTGTTCTTCTCGGTGATAGTGATGGGCACGACCATCAAGATGCTGCGCAACGTTCTGGAA GTCCTGATGGAGAGTACTCCGAGAGAGATCGACGCGACCAAGCTCGAGAAGGGGATTCTGGAGATGGAGGAAGTGGTGGCGATCCACGAGCTGCACATCT GGGCTATTACGGTTGGGAAGGTGCTCTTGGCTTGTCATGTTAAGATCAGACCGGATGCCAATGCGGACTCGGGGCTCGGAAGGGGGGGGAACTCCATCAA AAGGGAGTATAATATCAGCCATGTTACCATCCAGATTGAGCGTTAA
AA sequence Show only first row Show all	>Lus10002674 pacid=23159054 polypeptide=Lus10002674 locus=Lus10002674.g ID=Lus10002674.BGIv1.0 annot-version=v1.0 MEGQSPRQGQSIEINADIPDSSNVGGSKICGEAPCGFSDAQSNSEEARERTASMRKLLMAVGFCVLFMAVEVFGGIKANSLAILTDAAHLLSDVAAFAIS LFSLWAASWEANPRQSYGFFRIEILGALVSMQIIWLLTGIIVYEAIVRLIYNTSEVDGFLMFLVAAFGLVVNIIMAVLLGHDHGHGHGHDHGHDHSHSNG HDHEKASHHHHHDGHDHEHLEEGHEGKQPLLDKKEKKKNINVEGAYLHVLGDSIQSVGVMIGGAIIWYKPEWKIVDLICTLFFSVIVMGTTIKMLRNVLE VLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIRPDANADSGLGRGGNSIKREYNISHVTIQIER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58810		ATMTPA2, MTP3, ...	ARABIDOPSIS METAL TOLERANCE PR...		Lus10002674 [exp]	0	1
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	2.4	0.8575
AT5G16550			unknown protein		Lus10003850 [exp]	5.7	0.8146
AT2G43970			RNA-binding protein (.1.2)		Lus10027080 [exp]	6.0	0.8295
AT3G18410			Complex I subunit NDUFS6 (.1.2...		Lus10009027 [exp]	6.8	0.8478
AT1G71780			unknown protein		Lus10016547 [exp]	9.5	0.8354
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	10.0	0.8320
AT3G03773			HSP20-like chaperones superfam...		Lus10024119 [exp]	10.6	0.8084
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039506 [exp]	11.5	0.7965
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	11.8	0.8258
AT5G11810			unknown protein		Lus10022300 [exp]	12.4	0.8193

Compare expression of checked genes

Lus10002674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.