Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01400 566 / 0 unknown protein AT5G64320 170 / 8e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18475 166 / 2e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G07740 164 / 3e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16420 162 / 5e-43 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G55630 158 / 5e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 160 / 2e-41 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 156 / 5e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G14580 148 / 7e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 149 / 2e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005989 [exp] 169 / 2e-45 AT5G16420 656 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015397 [exp] 163 / 9e-44 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027465 [exp] 163 / 1e-43 AT1G55630 569 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 165 / 7e-43 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 160 / 2e-42 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026191 [exp] 157 / 5e-42 AT3G14580 391 / 2e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026218 [exp] 159 / 6e-42 AT1G53330 440 / 2e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040869 [exp] 156 / 2e-41 AT1G07740 491 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042476 [exp] 155 / 3e-41 AT3G14580 400 / 7e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G105900 [exp] 598 / 0 AT4G01400 576 / 0.0 unknown protein Potri.006G015900 [exp] 179 / 7e-48 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G057900 [exp] 171 / 2e-46 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G031600 [exp] 170 / 1e-45 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G103600 [exp] 169 / 1e-45 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 164 / 9e-44 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G204100 [exp] 160 / 9e-43 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G144100 [exp] 159 / 4e-42 AT1G55630 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 158 / 9e-41 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 152 / 5e-39 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10002675 pacid=23159057 polypeptide=Lus10002675 locus=Lus10002675.g ID=Lus10002675.BGIv1.0 annot-version=v1.0 ATGATGAGCAAGAGGAAGATGGTTATGATGCCGCGGTTGCCATGTGGCGGCCTCGAGCTGGGACATATGGTTGTGGCGACGTTGGCATGTGTTTGGTTGC CAGGTGGTAGTGGTGGTAGAGTTTTGGGATATGGGTATTGGTTGGCTAGTGGTAATGGGGTTGGAGGTTTGGGTCGGATTAGGGTGGAATTTGGTTATTG TTCGTTGGGAAGTGGAATTGGTGGGCGATTGGTTCTTCTTGGGGAGGGCAGTGATGATGATGTTGGTGTTCTTGATCAGACATTGTGTTTGGAAGCAGTG ATAGGTAACGGGAGAGGAGAAAGTGTGAGAGTTGTGGGGAGAAATGGAACCAAATTAAAGGGGAGAATAGAGGTGCAAAAGCCAAAGCGGAGGAAAGCGT GGCTTTTTTGCGAACTCCCACCACTGCCGCCGATAATCAAAGCAGACGGCGACAACAAAGCAATGAACCCACCATTACTCCGATCATCCAAAACCGCCAT CGCCGCCGCTTTCCGCCACGTCATTCTCCGGCCGAACCTACAACCTTCTCCTCTCTTCTACTCATCTTACCAGAAGCAGCAACATTTCCCCGTCAATTCA ACCTCCCTAATCGGATCTCCATCGCGAGTCCAGAAGCTCATAGCTTCACAATCGGATCCCCTCCTCGCCAAAGAGATCTTCGATTACGCTTCCCGCCAGC CCAATTTCAAGCACTCCTACTCAGCATACCTCGTCCTCATCCTCAAGCTCGGGAAATCCAAATACTTCTCCCTTATCGACGCCGTCGTCGCCGACCTGAA ATCGAAGCGCTACCAGCCAACCTCGCAGCTCTTTTCGTACCTCATCAGGATCTATGGAGAAGCTGGTTTGCTCGACAAGGTCATTAGGACATTTTCCCAC ACGATGATGGAGTTCGACTTCAAGCCGGCACCCAAACACCTGAACCTCATCCTCGAGCTTCTTGTATCTTGCCGGAGCTACGTCAAGCCGGCGTACGACC TATTTAGGAGAGCTAAAAGGAAAAACTTAGTAGCTCCCAATACGAAATCCTACAACATATTGATGCGCGCCATGTGTTTGAACGACGAGCTCAGCATTGC ATACAAGCTGTTCGACGAAATGTTCAAAAGAGATGTGGCTCCGGATGTCGAATCCTACCGCATTCTGATGCAGGCTCTCTGCAGGAAGAGTCAGGTCAAC GGAGCTGTCAACCTGTTGGAAGACATGCTGAACAAAGGATTCGTCCCGGATTCGTTAACCTACACCACCTTATTGAACAGCCTCTGCAGGAAGACGAAGC TCAGAGAAGCTTACAAGCTCCTCTGCAGGATGAAGGTGAAAAGATGCAGCCCTGACATTGTACATTACAACACTGTGATACTAGGGTTCTGCAGAGAAGG GCGTGCCATGGATGCTCGTAAAGTCCTCGAGGATATGGACGACTCGAATGTGTGCTTGCCGAACGTGGTGTCTTACAGAACTTTGGTTGCAGGGCTGTGT GATGAAGGAATGTTCAACGAGGCGAGAGATTATCTGGTGGAAATGCTGTCAAGAGGGTTTTCGCCTCATTTCTCGGTGGTTGATTGTGTGGTGAAGGGTC TGTGTGGTGTTGGAAAGATTGAGGAGGCTTGTGGAGTTGTGGAGGAAGTGTTGAAGCGTGGAGAGGGGTTGCATTTGGAGACTTGGAAGGTTGTGGTTCC TAGGGTTGTTTGTAATGGTGGTGGGGAGGAAGAGTTGGAAGGTGAATTGGATAGGGTTAAGAAGTTGGAGATCAAGGGGGATACCAGAATTGTTGATGCT GGTGCTGGCTTGGAGAGCTACTTGATTAATATGATACAAGGTAGTAGACGTAACAGAGTGTCGTCCGACAGTTTAAAATAA
AA sequence Show only first row Show all	>Lus10002675 pacid=23159057 polypeptide=Lus10002675 locus=Lus10002675.g ID=Lus10002675.BGIv1.0 annot-version=v1.0 MMSKRKMVMMPRLPCGGLELGHMVVATLACVWLPGGSGGRVLGYGYWLASGNGVGGLGRIRVEFGYCSLGSGIGGRLVLLGEGSDDDVGVLDQTLCLEAV IGNGRGESVRVVGRNGTKLKGRIEVQKPKRRKAWLFCELPPLPPIIKADGDNKAMNPPLLRSSKTAIAAAFRHVILRPNLQPSPLFYSSYQKQQHFPVNS TSLIGSPSRVQKLIASQSDPLLAKEIFDYASRQPNFKHSYSAYLVLILKLGKSKYFSLIDAVVADLKSKRYQPTSQLFSYLIRIYGEAGLLDKVIRTFSH TMMEFDFKPAPKHLNLILELLVSCRSYVKPAYDLFRRAKRKNLVAPNTKSYNILMRAMCLNDELSIAYKLFDEMFKRDVAPDVESYRILMQALCRKSQVN GAVNLLEDMLNKGFVPDSLTYTTLLNSLCRKTKLREAYKLLCRMKVKRCSPDIVHYNTVILGFCREGRAMDARKVLEDMDDSNVCLPNVVSYRTLVAGLC DEGMFNEARDYLVEMLSRGFSPHFSVVDCVVKGLCGVGKIEEACGVVEEVLKRGEGLHLETWKVVVPRVVCNGGGEEELEGELDRVKKLEIKGDTRIVDA GAGLESYLINMIQGSRRNRVSSDSLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01400			unknown protein		Lus10002675 [exp]	0	1
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	4.2	0.8369
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	6.0	0.7867
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004175 [exp]	6.9	0.8001
AT3G55550			Concanavalin A-like lectin pro...		Lus10040276 [exp]	9.5	0.7812
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	17.9	0.7847
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10036710 [exp]	19.4	0.7693
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10027505 [exp]	20.7	0.7573
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	21.8	0.7731
AT4G35540			zinc ion binding;transcription...		Lus10014847 [exp]	21.9	0.7422
AT3G27030			unknown protein		Lus10032030 [exp]	23.0	0.7476

Compare expression of checked genes

Lus10002675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.