Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01080 192 / 7e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G60000 87 / 4e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G50250 84 / 9e-19 CP31B chloroplast RNA-binding protein 31B (.1) AT3G52380 80 / 4e-17 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT4G24770 80 / 4e-17 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT2G37220 75 / 2e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G52150 71 / 3e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 67 / 1e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G08000 64 / 2e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G39260 63 / 3e-12 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030194 [exp] 429 / 1e-153 AT1G01080 207 / 2e-66 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023723 [exp] 87 / 2e-19 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10029372 [exp] 84 / 2e-18 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10002222 [exp] 84 / 2e-18 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 83 / 4e-18 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 82 / 5e-18 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017962 [exp] 82 / 9e-18 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10041952 [exp] 81 / 5e-17 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10037265 [exp] 79 / 1e-16 AT2G35410 234 / 1e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G105800 [exp] 210 / 6e-67 AT1G01080 271 / 7e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G172100 [exp] 100 / 1e-24 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 97 / 2e-23 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G340800 [exp] 87 / 5e-20 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.006G202000 [exp] 86 / 5e-19 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G090700 [exp] 82 / 4e-18 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 82 / 7e-18 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G141300 [exp] 77 / 2e-16 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G127200 [exp] 77 / 4e-16 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G068300 [exp] 76 / 1e-15 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10002676 pacid=23159076 polypeptide=Lus10002676 locus=Lus10002676.g ID=Lus10002676.BGIv1.0 annot-version=v1.0 ATGGCGACCACTCCCTTCCGGACTCCCATTATCGGAGCTCCTCCGGCACCGGCGAGATTCTTCTCCGTTTCCTGCCCGTCCTCTTCCATCCAATTTCGTC CCTCTAGTTCGTCGCCACTGTCCCATTCTTCCTCGGTGCGGTGGCGCCGGACGAAGAGCAGCGCATCGGCGGCGGTCTTCAATCAGGAATCCCTGCTGAC CGAGGAGATAGAGAACAGCGGCGGCGGAGGAGCTCTAGAGAGTGAGTTGAGAAAGGAAGTGAAGCCGTGTGAGTTATACGTCTGTAATCTCCCCAGGAGC TGCGATGTTCCGCAGCTCGTCGAACTTTTCCAACCCTACGGCACTGTTGTTTCCGTCGAGGTAGCGCCTCTAAGTAAACTTCTCGTGAAAGGAACTGAGT TAACAAATCTCTATATTCGTGCGTTCTCTACCGTTATTTCGGAGACAATGTTGCAGGTTTCCAAGAACTTGGAGACGGGAGTGAGCAAGGGTTGCGGAAA TGTAACAATGGGATCGAAAGCATCAGCCACGAGAGCAATGAAATCGTTGGATGGCATTGATGTCCAAGGTAGAGAAATGCGGGTAAGGCTCACATCCGAG ATGAACCAAGGTAGCGGCGAGACATCATTGCCAATGAAAGCTCTCATCTATGAGAGCCCTCACAAGCTGTACGTGGGAAATCTGGCCTGGTCGGTAAAGC CAGAGGACTTGAGGAACGAGTTCAGCCGGTTCGGGAATGTGGCCAGTGTGAGAGTGTTGTATGATCGCAAAGGAGGGCGGTTACGTGCTTACGCGTTTGT GTCCTTTTCCAACGAATCTGAACGCCAGGCTTCGCTAAGCTTGGACGGTAGAGTTGAGTCCTGA
AA sequence Show only first row Show all	>Lus10002676 pacid=23159076 polypeptide=Lus10002676 locus=Lus10002676.g ID=Lus10002676.BGIv1.0 annot-version=v1.0 MATTPFRTPIIGAPPAPARFFSVSCPSSSIQFRPSSSSPLSHSSSVRWRRTKSSASAAVFNQESLLTEEIENSGGGGALESELRKEVKPCELYVCNLPRS CDVPQLVELFQPYGTVVSVEVAPLSKLLVKGTELTNLYIRAFSTVISETMLQVSKNLETGVSKGCGNVTMGSKASATRAMKSLDGIDVQGREMRVRLTSE MNQGSGETSLPMKALIYESPHKLYVGNLAWSVKPEDLRNEFSRFGNVASVRVLYDRKGGRLRAYAFVSFSNESERQASLSLDGRVES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10002676 [exp]	0	1
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10016174 [exp]	2.8	0.9289
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	3.2	0.9279
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Lus10032000 [exp]	3.9	0.9199
AT4G24750			Rhodanese/Cell cycle control p...		Lus10019454 [exp]	5.3	0.9149
AT1G17850			Rhodanese/Cell cycle control p...		Lus10041981 [exp]	6.6	0.8826
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10033026 [exp]	8.4	0.8918
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	9.9	0.8961
AT1G26930			Galactose oxidase/kelch repeat...		Lus10024239 [exp]	12.4	0.8692
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	13.0	0.9026
AT4G15510			Photosystem II reaction center...		Lus10000352 [exp]	13.4	0.9006

Compare expression of checked genes

Lus10002676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.