Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01400 1222 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030195 [exp] 1513 / 0 AT4G01400 1221 / 0.0 unknown protein Lus10012607 [exp] 338 / 7e-110 AT4G01400 279 / 6e-88 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G179600 [exp] 1296 / 0 AT4G01400 1209 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0294 [flax] [poplar] Sec10 PF08318 [flax] [poplar] COG4 COG4 transport protein
Representative CDS sequence Show only first row Show all	>Lus10002677 pacid=23159062 polypeptide=Lus10002677 locus=Lus10002677.g ID=Lus10002677.BGIv1.0 annot-version=v1.0 ATGCCTTCCACTCCCAACGGATCAGCGCACAATTCCCTCGATGATGATGAAACCACCGCATCCTCCTCCATTAAATTCGGCTCGCCGGAGGCTTTAGACC ACGTCCGAAACCTAACCGACGTCGGAGCTATGACAAGGCTCCTCCACGAGTGCATCGCCTACCAGCGAGCTCAGGACGATGAGCTCGACGGTTTACTCGC TCAGAGGACCGATCTCGACAAACAACTCGTCCATCTCCAGAAATCAGCCGAGGTGCTTGACATTGTAAAGGCGGATTCCGACTACATGCTCAGCAACGTC GGCTCCACGTGTGATCTCGCCGACAGCGTCAGTGCCAAGGTTAGGGAGCTGGACCTAGCTCAGTCGCGTGTGAACTCGACGCTGCACCGGATCGATGCGA TTGTCGAGAGAGGGAATTGCATCGAAGGAGTGAAGAACGCTCTGGAATCGGAGGATTACGAGTCCGCCGCCAAGTACGTGCAGACGTTTCTCCAGATTGA TGCTAAGTACAAGGATTCCGGATCAGAGCAGAGAGATCAGTTACTGGCGTCCAAGAAGCAGCTGGAAGAAATTGTTCGGAGACGGCTCTCTGCTGGGGTG GAGGAGCGTGATCATCCCACGATTCTGAGGTTTATTCGGCTCTATTCGCCTCTTGGATTGGAGGAGGAAGGGTTACAGGTTTACGTAGTGTATTTAAGGA AGGTGATTTCTATGAGGTCTCGGCTTGAATATGACCATTTGGTGGAGCTGATGGAGCAGTCTCATACTCAAAACCAGGTTGATTTCGTTGGTTCTTTGAC TAGCTTGTTTAAAGACATTGTTTTAGCCATTGAAGAAAATTACGAGATCTTGAGGAGTCTCTGTGGAGAAGATGGGATTGTTTACGCCACTTGTGAATTG CAAGAAGAATGTGATTCTAGGGGTACTCTGATTTTGAAGAAGTACATGGAATACAGGAAATTGGCTAAGTTAGCCTCAGAGATTAATGCCCAAAACAAGA ACTTGCTTGCTGTTGGAGGAGGACCAGAAGGACCTGATCCGAGAGAGGTTGAATCGTACCTACAAGAGATTCTATCTCTGATGGAACTAGGTGAAGATTA CACAGGGTTTATGGTTTCCAAGATTAAAGGTTTGACCTCAGTTGATCCAGAGTTGGTGCCAAGAGCCACAAAGGCTTTTAGGAGTGGGAGCTTTAGCAGA GTAGTCCAAGACATTACTGGATTTTATGTGATCTTGGAAGGATTCTTCATGGTTGAAAACGTTAGGAAAGCCATTCGGATTGACGAGCAAGTGCCTGATA GCCTCACCACTTCTATGGTGGATGATGTGTTCTATGTTCTGCAGAGCTGCTTAAGGAGGGCGATTTCCACTTCAAACATCAGCTCGGTGATTGCTGTCCT TAGCGGTGCAGGTAGTTTGTTGAGCAACGAATACCAAGAGGCTTTGCAGCAGAAAATGAGGGAGCCAAACCTTGGTGCGAAATTGTTTCTTGGTGGTGTT GGTGTGCAAAAGACCGGGACAGAGATTGCAACTGCTCTCAACAATGTGGACGTCAGCAGTGAGTATGTACTGAAGTTGAAGCATGAAATTGAAGAGCAAT GTGCAGAGGCATTTCCGGCCCCGGCCGATAGAGAAAAGGTGAAATCTTGTTTATCCGAGTTGGGAGACACTAGCACTACGTTCAAGCAGGCACTCACCGC CGGATTGGAGCAACTCGTTGCGACAGTGACTCCCCGAATCCGGCCGGTCCTCGACAATGTGGCAATTATCAGCTACGAGCTGTCGGAATCCGAATACGCG GAGAATGAGGTGAACGATCCCTGGGTTCAGAGGCTTCTCCACTCCGTCGAGACCAACGTATCGTGGCTTCAACCTTTGATGACCGCCAGCAACTACGACT CGTTCGTCCACTTGGTCATCGATTTTATCGTCAAGAGACTGGAAGTGATCATGATGCAGAAGAGGTTTAGCCAGCTGGGTGGGCTCCAGCTGGACAGGGA CACTAGGGCTTTGGTCAGTCATTTCTCTGGGATGACTCAGCGGACGGTGAGGGACAAATTCGCCCGGCTCACCCAGATGGCGACTATACTTAACTTGGAG AAGGTGTCGGAGATCCTCGATTTCTGGGGGGAGAACTCTGGTCCGATGACCTGGAGGCTGACTCCTGCTGAGGTTAGAAGGGTGCTGGGTTTGAGGGTTG ACTTTAAACCAGAAGCAGTTGCTTCTCTTAAGCTGTAA
AA sequence Show only first row Show all	>Lus10002677 pacid=23159062 polypeptide=Lus10002677 locus=Lus10002677.g ID=Lus10002677.BGIv1.0 annot-version=v1.0 MPSTPNGSAHNSLDDDETTASSSIKFGSPEALDHVRNLTDVGAMTRLLHECIAYQRAQDDELDGLLAQRTDLDKQLVHLQKSAEVLDIVKADSDYMLSNV GSTCDLADSVSAKVRELDLAQSRVNSTLHRIDAIVERGNCIEGVKNALESEDYESAAKYVQTFLQIDAKYKDSGSEQRDQLLASKKQLEEIVRRRLSAGV EERDHPTILRFIRLYSPLGLEEEGLQVYVVYLRKVISMRSRLEYDHLVELMEQSHTQNQVDFVGSLTSLFKDIVLAIEENYEILRSLCGEDGIVYATCEL QEECDSRGTLILKKYMEYRKLAKLASEINAQNKNLLAVGGGPEGPDPREVESYLQEILSLMELGEDYTGFMVSKIKGLTSVDPELVPRATKAFRSGSFSR VVQDITGFYVILEGFFMVENVRKAIRIDEQVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVIAVLSGAGSLLSNEYQEALQQKMREPNLGAKLFLGGV GVQKTGTEIATALNNVDVSSEYVLKLKHEIEEQCAEAFPAPADREKVKSCLSELGDTSTTFKQALTAGLEQLVATVTPRIRPVLDNVAIISYELSESEYA ENEVNDPWVQRLLHSVETNVSWLQPLMTASNYDSFVHLVIDFIVKRLEVIMMQKRFSQLGGLQLDRDTRALVSHFSGMTQRTVRDKFARLTQMATILNLE KVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAVASLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01400			unknown protein		Lus10002677 [exp]	0	1
AT4G01400			unknown protein		Lus10030195 [exp]	1.0	0.9678
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	2.8	0.9209
AT4G38500			Protein of unknown function (D...		Lus10024001 [exp]	3.7	0.8970
AT2G32450			Calcium-binding tetratricopept...		Lus10033182 [exp]	3.7	0.9188
AT1G80510			Transmembrane amino acid trans...		Lus10034093 [exp]	4.5	0.9197
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	4.6	0.9220
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	4.7	0.9276
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10039784 [exp]	5.2	0.8733
AT5G19130			GPI transamidase component fam...		Lus10032125 [exp]	6.0	0.9047
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	6.9	0.9192

Compare expression of checked genes

Lus10002677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.