Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01090 677 / 0 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1) AT1G59900 248 / 2e-78 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1) AT1G24180 242 / 6e-76 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G09300 126 / 4e-32 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) AT1G21400 110 / 3e-26 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G34780 79 / 1e-15 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G65750 49 / 7e-06 2-oxoglutarate dehydrogenase, E1 component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030196 [exp] 305 / 6e-104 AT1G01090 271 / 4e-91 pyruvate dehydrogenase E1 alpha (.1) Lus10013295 [exp] 246 / 2e-77 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10010728 [exp] 238 / 2e-74 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10029216 [exp] 222 / 2e-68 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10030820 [exp] 219 / 2e-68 AT1G59900 546 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10028648 [exp] 124 / 1e-30 AT1G21400 645 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10020895 [exp] 122 / 4e-30 AT5G09300 629 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10018945 [exp] 122 / 2e-29 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10033480 [exp] 98 / 4e-22 AT5G09300 558 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G179500 [exp] 698 / 0 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1) Potri.010G038400 [exp] 234 / 6e-73 AT1G59900 651 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.008G192500 [exp] 229 / 4e-71 AT1G59900 673 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.005G064000 [exp] 128 / 2e-32 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.005G185400 [exp] 119 / 5e-29 AT5G09300 619 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.002G074900 [exp] 113 / 4e-27 AT1G21400 586 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Potri.010G209000 [exp] 51 / 2e-06 AT5G65750 1908 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1) Potri.008G051600 [exp] 50 / 3e-06 AT3G55410 1907 / 0.0 2-oxoglutarate dehydrogenase, E1 component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component
Representative CDS sequence Show only first row Show all	>Lus10002678 pacid=23159078 polypeptide=Lus10002678 locus=Lus10002678.g ID=Lus10002678.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCTGCTTTCTCTCTCGCTGCCTCCTCCATCTCTGCTTCGAGATCTCAAGATAAGCTCTGTTCCCAAACTCTTTCCACCGCCGCCAATTCTT CCTTCCTCGGATCTGCTTGCCAATTCCGATGCAAATCTGTTCGTCAGCCGATTTCCCTCCGCCGCCGCGGCGCATCTTCCTCCGTCGCCGCCGCCCTCTC GGATGTCAAGGAGAAGAAGTCCAAGGCTAGCTCCAATCTGTTGATTACCAAAGAAGAAGGTTTGGTCCTATATGAAGACATGGTGTTAGGAAGAGCATTT GAGGACATGTGTGCCCAAATGTACTACAGAGGCAAAATGTTCGGCTTCGTCCATCTCTACAATGGCCAAGAAGCCGTCTCCACCGGATTCATCAAGCTAC TAACCAAGGAAGACTCCGTCGTCAGTACCTACAGAGACCACGTCCACGCCTTGAGCAAAGGCGTCCCAGCGCGTGCCGTGATGAGCGAGCTCTTCGGCAA GACCACCGGATGCTGCCGCGGCCAAGGCGGATCGATGCACATGTTCTCCAAAGAACACAATGTCCTTGGCGGGTTCGCATTCATCGGCGAAGGAATCCCC GTAGCAACCGGTGCGGCTTTCGCCTACAAGTATCGGAAGGAAGTTCTCAAGGCACCAGATAGCGCTCAGGTGGCGGTGGCGTTTTTCGGAGACGGAACGT GTAACAACGGGCAGTTCTTCGAGTGTCTCAACATGGCCGCGTTGTGGAAGTTGCCGATTGTGTTTGTTGTTGAGAATAATTTGTGGGCTATTGGGATGTC GCATTTGCGGGCGACTTCGGATCCTGAGATTTATAAGAAGGGACCCGCGTTCGGAATGCCTGGCATTCATGTTGATGGGATGGATGTTTTGAAGGTTAGG GAAGTTGCTCAGGAGGCGATCGGTAGGGCTAGGAGAGGTGAAGGTCCGACTTTGGTGGAATGCGAAACTTACCGGTTCAGAGGACACTCGTTGGCGGATC CCGATGAACTCCGTAACCCAGATGAGAAAGCTCACTACGCAGCAAGAGACCCCATCTCGGCTCTTAAGAAGTACATGTTTGAGAACAAGCTCGTGAACGA GTCGGAACTGAAGGCGATCGACAAGAAGATAGACGAACTTGTGGAGGAGGCTGTGGAGTTTGCAGACGAGAGCCCGGTTCCAGGCCGCAGCCAGCTGCTG GAGAATGTGTTTGCTGATCCAAAGGGCTTCGGAATCGGACCTGATGGGCGGTACAGATGCGAGGACCCCAAGTTCACTGAAGGAACAGCTCAAGTCTAG
AA sequence Show only first row Show all	>Lus10002678 pacid=23159078 polypeptide=Lus10002678 locus=Lus10002678.g ID=Lus10002678.BGIv1.0 annot-version=v1.0 MASAAFSLAASSISASRSQDKLCSQTLSTAANSSFLGSACQFRCKSVRQPISLRRRGASSSVAAALSDVKEKKSKASSNLLITKEEGLVLYEDMVLGRAF EDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKEDSVVSTYRDHVHALSKGVPARAVMSELFGKTTGCCRGQGGSMHMFSKEHNVLGGFAFIGEGIP VATGAAFAYKYRKEVLKAPDSAQVAVAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIYKKGPAFGMPGIHVDGMDVLKVR EVAQEAIGRARRGEGPTLVECETYRFRGHSLADPDELRNPDEKAHYAARDPISALKKYMFENKLVNESELKAIDKKIDELVEEAVEFADESPVPGRSQLL ENVFADPKGFGIGPDGRYRCEDPKFTEGTAQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10002678 [exp]	0	1
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030196 [exp]	1.0	0.9379
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030197 [exp]	1.4	0.9000
AT4G23820			Pectin lyase-like superfamily ...		Lus10032374 [exp]	2.4	0.8524
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	9.6	0.8006
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10009147 [exp]	9.8	0.7530
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10035518 [exp]	15.3	0.7597
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10039649 [exp]	19.2	0.7779
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10010025 [exp]	22.1	0.7741
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10027781 [exp]	25.5	0.7579
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10038017 [exp]	27.1	0.7705

Compare expression of checked genes

Lus10002678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.