Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00800 1838 / 0 SETH5 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030199 [exp] 2717 / 0 AT4G00800 1498 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10030198 [exp] 128 / 1e-34 ND 39 / 1e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G105601 [exp] 2368 / 0 AT4G00800 1966 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS
Representative CDS sequence Show only first row Show all	>Lus10002679 pacid=23159063 polypeptide=Lus10002679 locus=Lus10002679.g ID=Lus10002679.BGIv1.0 annot-version=v1.0 ATGACCAAGAATCTCACCGCCGCCGTCGCTGGCGAGCCCTCAGTAGAACTCGACCTCGACTCTTTCCTCAAACTCCACTCCACTTCCGACGACGACGACG ATCCTAATCCCCTTCCTCACCGCTCCCTCGACGAAATCCTCAACGACTCCGATTCCTCTCCTTCTCCTCCTCCCTCCCCTTCCTCTCGTCTCATCCGCTC TACGGATTTGCATCCGCAACCTCTTAACCGCGCGCAATCTCTCGGTTCGAGTTACAATTCTGGACAGTCCAAGTCCGATTCGTTCGCTCGGGTTAGGGCC AGCTTGTTATCCACTGATCGCTCCTGGAGAGGAGCTTCCGCTGCTTCTACTGCGAACCGGACGTTGCCGTCTTTGTTTGGCGGAGTGAGATCCAATGTGA AACCAGGTGCGGCGCTTGCTGCTGCTGCTGCGGCTTCGAGGTCGCTCCCGACTCCGCACGCTGCCGCAATTAAGTCCAGGAGGGCCGGCACCGCTGCCGC AATTAAGTCCGGGGGGGCCGGCAGTGTAACTGCCGCGGCGCTGCAGAAGGTTCTGGTGAGTGAGGAGTTTGGTTCCGGTGGTGGTGGTGGTTTTGATCCG GAGATTGCTTCGACTCCGTCAAATGGAGAGTCCGTTGAAGCTGGAAGCTCTGAGAAGGAAATTGCTGAAACAAACAAAGATGAAAATGAAGTCAAAACCG AAATTGAAGTGGACGAACGAGCTGTTAACGCTGACAGTGGAGTTAGCCGAATTTCCGATGCTACCATTAGCCAAAGTCCGGATGATGCTGTGGCAGTTTC AGCTGCCAGTGAGTTTGATGAAGATGGGAAAGAAACGTCCGTGTTAGCTGATGATGATGATGATCGTTCTGCATTACTGGTGGGGGGTGACTCCATTGGA GGATATCAGGATAATGAAGATGAGGCGATCGACAATGACTCTGCGTTGGAAGAGGTAGATGAGGAGGAACTTGTGAGTCCTGGCGATAATTTTAGTTCCC ATGGCGATGGTTCTCAGCTTTTAGACGGGAAAATGGAACAGCTGGAAAGTGGGGGGATAAGTAGGGGAGAGCATAAGCTGCAACCTGTCCTAAAGCCTCT TGAAATGGCAGAGGAACTTGAGAAGAAGCAAGCTTCGACTGGCTTGCACTTGGAAGAAGGTGCAGCTGCTCAGCCAATGAGGCTTGAGGGTGTTCGAAGA GGTTCCATTACTTTAGGATACTTTGACAATGATGCCAACAATATTATCTCTAGAACATTGGCATCTCAGGCTTTTAAGCGAGATCACGGTTCCCCTCAAG TCCTAGCTGTTCATCTTAACTACATTGCTGTTGGCATGTCGAAAGGTCTCGTTTTTGTTGTTCCGAGTAGATATTCTGCTCAAACTGTTGATAGCATGGA CACGAAGATGCTGATGCTTGGCATGCAAGGGGATCGATCTCATGTCCCGGTAACTTCCATCTGCTTCAATCATCAAGGGGATATGCTATTGGCCGGTTAT GGAGATGGTCATGTTACTGTCTGGGATCTGCAGAAAGCTTCTGTAGCTAAAGTTATTACTGGCGAGCATAATGCACCTGTAGTTCATGCATTCTTTATGG GCCAGGACTCTCAAGTAAGTCGTCAATTTAAAGCTGTGACTGGCGATAGCAAAGGTGTGGTAGTGTTGCATTCATTCTCAGTGTTGCCCTTGCTGAATCG ATTCAACATTAAAACTCAGTGTCTTCTTGATGGACAAAGAACGGGAGTTGTTTTATCAGCCTCACCACTTATCCACGAAGAGTTCTCTGGAGCTGCTGTG CCATCTTCACCTGCTAATGGATCTATTTCATCCAGCAGCATTGGGAGCATGATGGGAGGTGTAGTTGGAGGAGATGCAGGTTGGAAACTTTTCAATGAAG GTTCTCCTCCAGCTGAAGAAGGTGTGGTCATATTCGCCACTCATAAAACCGCACTGGTGATCAGACTTACTCCTTCGGTGGAAGTATATGCAGAACTCTC CAGGCCAGATGGTGTCAGGGAAGGTTCAATGCCTTATACCGCCTGGAAATCTACCCTGCAAACTCACAGTTCACATACTGAAAATGTTCATGCAGATGCT GCAGATAGAGTGTCCTTGCTAGCAGTCGCTTGGGATCGAAAAGTTCAAGTTGGAAAATTAGTGAAGTCTGAGTTGAAAATATATGGAAGTTGGTTCCTTG ATAGTGCGGCCATAGGTGTGGCTTGGTTGGATACTCATATGCTCGTGGTTCTCACGGTCACCCGACAAATTTACTTATTCTCAAATGATGGTACCCTGAT TCACCAGACTGGTTTCACTGTTGATGGTCCTGGAGGAGATGACCTTGTGGCTTATCATACTCAGTTCATGAATGTATTTGGAAACCCTGAGAAAGCATTC CACAACTGCATTGCTGTTAGGGGAGCTTCAGTTTACATTCTTGGAACCACACAGCTACTTACTTCCCGCCTTCTTCCTTGGAAGGAACGTATACAGGTTT TGCGTGGAGCTGGAGACTGGATGGGTGCCCTGAATATGGGAATGACTTTTTATGATGGGCAAGCTCATGGTGTTATTGACCTCCCTAGATCTCTGGATGC TGTTCAAGAAGCCATAATGCCATATCTGGTGGAGTTGCTATTATCATATGTAGATGAAGTATTTTCTTATATTTCAGTAGCCTTCTGCAACCAAATTGAA AAGGTGGAGCGGCAGGACGATTCGAGGAATGAAAGCGGTTCTGTGCATTCTGAAATAAAAGAGCAGTTCACCCGTGTTGGTGGTGTTGCAGTGGAGTTTT GTGTTCACATACGGCGGACTGACTTACTTTTTGATGAAATTTACTCCAAGTTTAGAGCTGTTAAACACAGAGATACATTCTTGGAATTGTTAGAGCCATA TATATTGAGAGATATGCTTGGTTCTTTACCACCAGAGATCATGCAAGCACTAGTTGAGCATTACAGCAGCAATGGGTGGTTGCAGCGTGTAGAACAATGT GTCCTTCATATGGATATCTCTTCTTTGGATTTTAATCAGGTGGTGAGGCTGTGCCGTGAGCATGGGCTTTTTGGCGCCCTCATCTATCTTTTCAATAAAG GATTGGACGATTTCAAGGCACCTTTAGAGGAGTTGTTGAATGTTACACGTAATAGTCAAGGGAAGGATGCCACTGGTCTTGGGTATAGATTGCTTGTGTA TTTAAAGTATTGCTTTTCTGGTCTAGCATTTCCTCCAGGACATGGAGCTCTTCCTCCTATGCGTTTGCCTTCTCTTAGAGCGGAGCTTGTGCGGTTCTTG CTGGAAGTTTATGAAGCTGGAAAGCCACAGCCCACCTCAAGCTTGTCATCAGAAGGAAGATATCCTAATCTGTATCATCTTTTACAGTTGGATACAGAAG CTACGTTGGATGTTCTGAGATGTGCTTTTGTGGATGACGGTAGTCGAAAGCCTGATATTTCTTCAGATAACAATTCTGAAGTACAGAAAGAGCACCTGCT TAAACAAGATGCCACAGATGAAACTCAGAATCTATTAGTTCAGAACACAGTTGATGCTCTTGCACTAATTATCGAAACAGATACATTAAGAGCTTCTGCT AAGATTGGTGATGATGGATCGGCAGAGGCATGGCCTTCAAAGGGAGATATAGGATATGTAATTGAATTCATTGCTCAACATATCGCAAGTGGAAAAGCCC AAGTTTCGAAGAGGGTACTAAGTAAGATATTAGAGTACCTGACATCACAGAATGACTTCTCGCTTAGTATTCCCACACATACATCTGAAATTTTGAAGGG AAGAGAGAAGCGAGTGCTTGCCCTTTTGGAGGTAGTGCCTGATACCGACTGGAATTCATCGTATGTGTTGACACTCTGCGAGAATGCACATTTCTATCAG GTATGTGGCTTAATTCATACCATGAGACGTCACTATCTTGCAGCCTTGGATAGCTATATGAAAGAAGTGGGTGAACCCATTCACACATTCCTTTATATCA ACAACATGTTGGAACAATTGAGCAATTCTGAATTGAATGAGTTTCAATCTGCCATCATGTCTCGAATTCCAGAGCTGCTTGGCTTGAGCAGAGAGGGGAC ACTCCTACTTGTCGTCAACCATTTTTTTAAGGAGATGCCGCACATTCTTTCCATATTGCAATCACATCCTGAAAGAATGTTTCTCTACTTGAAGACAGTG ATTGAGGTTCACTTGTCTGGGGCTCTAGATTTCTCGCAGTTATTAAAAGGTGCCAGCTTAGATGCTTTAATGAGAAGAAAAGTGAAAGCTCAGCCTAAAG ATCTTGAGGCTTATTTGGAAAGAATATCCGACTTTCCTAAGCGCATGCGAAATAATCCTGTTCCTGTCACTGATGATATGATTGAGCTTTATGTGGAGTT ACTCTGTCGATATGAACGCAATTCAGTTCTCAAATTCCTGGAGACTTTTGACAGCTACCGTGTAGAGCACTGTTTACTCCTGTGCCAGGAGCATGGTATA ATAGATGCTGCTGCATTTTTGTTGGAGAGAGTAGGTGACGTGGGATCTGCTCTTTCACTTACGCTTTCTGGACTCAGTGACAAATTTGTGGAACTTGATC AAGAAGTGGCAACTTCACTGAAGGCAACTCGAGGCCGTTCCTCCAGAATTGAACATTACAATACCGTTTTGAAGACAAAAGAGGTGAATGATATAGAGTC CATTCTAAAGGCATGTGTCGGACTTTGTCAGCGGAACACCCCTCGCTTGCAGCCCGATCAGTCAGAGATGCTCTGGTTCAAGCTACTCGACTCGTTCTGC GCACCTTTAATAGATTCATCCAGTGATAATAGCATTTCGAAAGAGGGAAATAACAGCGCCGGATTGATGCCAGATACTTTAGGCATATTGGAAGATGACG AGTCGTGCACGATCAAGTGGAAAATTGGGAAGAGTCACAAAGGCGCTCACATCTTGCGCAAATTATTCTCTCTGTTCATCAAAGAGATTGTTGAAGGGAT GATAGGGTTCATCCCGCTCCCGAGCATCATGTCTAAGCTCCTCACTGACAACAGCGGCCATGAATTCGGGGACTTCAAACTTACAATCCTCGGGATGCTT GGCACTTACGGATTCGAACGAAGAATTCTGGACACTGCCAAATCCCTAATAGAGGATGACAGCTTCTATACCATGAATCTGTTAAAGAAGGGGGCATCTC ATGGATATGCACCTCGAAGCCTTATGTGCTGTATATGCAGCTGCGCTCTCACAAAGAACACTTCCAGCTTTCGCGTCAGGGTATTCAATTGCGGCCATGC AGCCCATCTAGAATGCGGATTTCTAGATACCGAGTCGTCAAGCAAAGGATCTTCATTGGGTTGCCCCGTCTGTATGCCCAAGACGAATGCTCAGAAGCCT AGAAACAAATCAGATCTCACAGATAATAGCTTGTTCAACAAGGTATCATCAAGACCTGAAAGGTCACAAGGAAGCGGCACCTTACTTCCGCACGAAGACT CAATGGACAACGCTTACGGACTTCACCAAATGTCACGGTTCGAGATCCTGAGTAATCTTGGGAAAGATCAAAAGCTGGCGGCACACGTAGAGAACATGCC TCAGCTCCGGCTAGCGCCCCCAGCTGTCTACCACGAGAGAATACAGAAAGGGCCACCACAGATTTTGGCACAAGGCAACGGGAGTGGGGTTACGAAACAT GAGAACCCGAGCAGGAAACTTAGAGATATTAAAGTTAAGGGGACATCGCTTCGTTTCCCGCTGAAGACGAGCATATTCGGTGAGATGCTCTCGCAGTTCA TACATTAA
AA sequence Show only first row Show all	>Lus10002679 pacid=23159063 polypeptide=Lus10002679 locus=Lus10002679.g ID=Lus10002679.BGIv1.0 annot-version=v1.0 MTKNLTAAVAGEPSVELDLDSFLKLHSTSDDDDDPNPLPHRSLDEILNDSDSSPSPPPSPSSRLIRSTDLHPQPLNRAQSLGSSYNSGQSKSDSFARVRA SLLSTDRSWRGASAASTANRTLPSLFGGVRSNVKPGAALAAAAAASRSLPTPHAAAIKSRRAGTAAAIKSGGAGSVTAAALQKVLVSEEFGSGGGGGFDP EIASTPSNGESVEAGSSEKEIAETNKDENEVKTEIEVDERAVNADSGVSRISDATISQSPDDAVAVSAASEFDEDGKETSVLADDDDDRSALLVGGDSIG GYQDNEDEAIDNDSALEEVDEEELVSPGDNFSSHGDGSQLLDGKMEQLESGGISRGEHKLQPVLKPLEMAEELEKKQASTGLHLEEGAAAQPMRLEGVRR GSITLGYFDNDANNIISRTLASQAFKRDHGSPQVLAVHLNYIAVGMSKGLVFVVPSRYSAQTVDSMDTKMLMLGMQGDRSHVPVTSICFNHQGDMLLAGY GDGHVTVWDLQKASVAKVITGEHNAPVVHAFFMGQDSQVSRQFKAVTGDSKGVVVLHSFSVLPLLNRFNIKTQCLLDGQRTGVVLSASPLIHEEFSGAAV PSSPANGSISSSSIGSMMGGVVGGDAGWKLFNEGSPPAEEGVVIFATHKTALVIRLTPSVEVYAELSRPDGVREGSMPYTAWKSTLQTHSSHTENVHADA ADRVSLLAVAWDRKVQVGKLVKSELKIYGSWFLDSAAIGVAWLDTHMLVVLTVTRQIYLFSNDGTLIHQTGFTVDGPGGDDLVAYHTQFMNVFGNPEKAF HNCIAVRGASVYILGTTQLLTSRLLPWKERIQVLRGAGDWMGALNMGMTFYDGQAHGVIDLPRSLDAVQEAIMPYLVELLLSYVDEVFSYISVAFCNQIE KVERQDDSRNESGSVHSEIKEQFTRVGGVAVEFCVHIRRTDLLFDEIYSKFRAVKHRDTFLELLEPYILRDMLGSLPPEIMQALVEHYSSNGWLQRVEQC VLHMDISSLDFNQVVRLCREHGLFGALIYLFNKGLDDFKAPLEELLNVTRNSQGKDATGLGYRLLVYLKYCFSGLAFPPGHGALPPMRLPSLRAELVRFL LEVYEAGKPQPTSSLSSEGRYPNLYHLLQLDTEATLDVLRCAFVDDGSRKPDISSDNNSEVQKEHLLKQDATDETQNLLVQNTVDALALIIETDTLRASA KIGDDGSAEAWPSKGDIGYVIEFIAQHIASGKAQVSKRVLSKILEYLTSQNDFSLSIPTHTSEILKGREKRVLALLEVVPDTDWNSSYVLTLCENAHFYQ VCGLIHTMRRHYLAALDSYMKEVGEPIHTFLYINNMLEQLSNSELNEFQSAIMSRIPELLGLSREGTLLLVVNHFFKEMPHILSILQSHPERMFLYLKTV IEVHLSGALDFSQLLKGASLDALMRRKVKAQPKDLEAYLERISDFPKRMRNNPVPVTDDMIELYVELLCRYERNSVLKFLETFDSYRVEHCLLLCQEHGI IDAAAFLLERVGDVGSALSLTLSGLSDKFVELDQEVATSLKATRGRSSRIEHYNTVLKTKEVNDIESILKACVGLCQRNTPRLQPDQSEMLWFKLLDSFC APLIDSSSDNSISKEGNNSAGLMPDTLGILEDDESCTIKWKIGKSHKGAHILRKLFSLFIKEIVEGMIGFIPLPSIMSKLLTDNSGHEFGDFKLTILGML GTYGFERRILDTAKSLIEDDSFYTMNLLKKGASHGYAPRSLMCCICSCALTKNTSSFRVRVFNCGHAAHLECGFLDTESSSKGSSLGCPVCMPKTNAQKP RNKSDLTDNSLFNKVSSRPERSQGSGTLLPHEDSMDNAYGLHQMSRFEILSNLGKDQKLAAHVENMPQLRLAPPAVYHERIQKGPPQILAQGNGSGVTKH ENPSRKLRDIKVKGTSLRFPLKTSIFGEMLSQFIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00800		SETH5	transducin family protein / WD...		Lus10002679 [exp]	0	1
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10029309 [exp]	3.9	0.9331
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032589 [exp]	4.8	0.9530
AT3G12590			unknown protein		Lus10001699 [exp]	5.3	0.9452
AT5G11700			unknown protein		Lus10005497 [exp]	7.1	0.9207
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	8.4	0.9399
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	8.9	0.9407
AT4G39420			unknown protein		Lus10006814 [exp]	10.0	0.9461
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001415 [exp]	11.0	0.9435
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	12.8	0.9459
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	13.4	0.9255

Compare expression of checked genes

Lus10002679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.