Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46780 191 / 3e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G76460 160 / 3e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G20880 160 / 3e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G33470 151 / 5e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22910 147 / 2e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G78260 141 / 5e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G22330 139 / 6e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G11412 132 / 1e-37 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G54770 128 / 3e-35 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G53680 125 / 7e-35 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030202 [exp] 450 / 5e-160 AT2G46780 224 / 2e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10036503 [exp] 141 / 4e-40 AT3G54770 156 / 5e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10041423 [exp] 141 / 5e-40 AT3G54770 181 / 3e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039151 [exp] 120 / 1e-31 AT1G33470 182 / 7e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023817 [exp] 94 / 2e-21 AT3G15010 188 / 5e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021035 [exp] 89 / 3e-19 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 86 / 3e-18 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 86 / 3e-18 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 86 / 3e-18 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G179100 [exp] 245 / 5e-80 AT2G46780 275 / 2e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G105101 [exp] 234 / 2e-75 AT2G46780 252 / 4e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G094400 [exp] 163 / 3e-48 AT1G33470 257 / 3e-86 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.019G068400 [exp] 159 / 6e-47 AT1G33470 246 / 7e-82 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G004600 [exp] 158 / 2e-46 AT1G76460 377 / 9e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G256700 [exp] 158 / 4e-46 AT1G76460 335 / 5e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G022100 [exp] 157 / 4e-46 AT2G46780 161 / 1e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G005500 [exp] 153 / 9e-45 AT2G46780 145 / 1e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G098100 [exp] 151 / 8e-44 AT1G78260 164 / 5e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G216800 [exp] 143 / 6e-41 AT3G54770 216 / 4e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10002684 pacid=23159073 polypeptide=Lus10002684 locus=Lus10002684.g ID=Lus10002684.BGIv1.0 annot-version=v1.0 ATGTCTCAGCAGCAAAGGCAATTCCCAATAGGGAATTACAACATGAACATCGACACAACTTTCACCAAGCTGTTCGTTGGAGGGTTGGCTTGGGAGACTC AGAGGGAAACTTTGAGGCGTTACTTTGAGCAGTTTGGGGAGATCATTGAAGCTGTTGTGATCACTGACAAGAACACTGGCAGATCCAAAGGCTACGGCTT TGTTACGTTTAAGGATCCAGAGTCAGCTATGAGAGCTTGTCAAAACCCATCTCCTGTGATTGATGGAAGGAGGGCAAACTGCAACCTTGCTTCCCTTGGT GCCACTACAAAACCTACTACTCGTCCTAATTCATTCCCTCCTCAACATGGTGGAAGGTTTAGAGGAGTAGAGGCTGGATTGGTGGCTGCTGCACCTGCTT TTCAACCTTCTTCAGCTGCTGCTGCATCCTACATTCCTCAACCCACTGGGCAATACACATTTCCTTATTCAGCTTATGGGTACACTGGATATCCACAAGA CACTGCCGTTTATCATCCCATGAGCTATTATGGTGTTTATGGAGGTGGTCATCATCATCAGCATCAACATCAACAAGTGTCTCCATATTACGCGGCTGGA GCACCTGGAGGGATGCCATTCCACAATTTGTATCCTTTCTACACTCAGTATGCACAGGGAGGAAGCAGCAGTAGTAACCAAGCTCATGGCTATGGAGGAG GAGGAGTAGGAGGAGGTGTTCAATACCCTCAGCATCAAGCTCAAGTTGTGCAATTTACGCCGTACTTGCCTCAGCATCACTATGCATCTTCCGGAATCCT GTCCATGCCGCCTTCTCCTGCTGCTGCTCAACCTCTGCCTATTGCAGTTACCCCTACAGCCTTGCCAACGACAACAACAACTTCTTCATCCACGGTCGCA ATGCCTGCTCAGACAACAGCACCAACATCGTCAGGAGCAGCTTCTGATCAGACTTCATCATCAAGCAAATGA
AA sequence Show only first row Show all	>Lus10002684 pacid=23159073 polypeptide=Lus10002684 locus=Lus10002684.g ID=Lus10002684.BGIv1.0 annot-version=v1.0 MSQQQRQFPIGNYNMNIDTTFTKLFVGGLAWETQRETLRRYFEQFGEIIEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLG ATTKPTTRPNSFPPQHGGRFRGVEAGLVAAAPAFQPSSAAAASYIPQPTGQYTFPYSAYGYTGYPQDTAVYHPMSYYGVYGGGHHHQHQHQQVSPYYAAG APGGMPFHNLYPFYTQYAQGGSSSSNQAHGYGGGGVGGGVQYPQHQAQVVQFTPYLPQHHYASSGILSMPPSPAAAQPLPIAVTPTALPTTTTTSSSTVA MPAQTTAPTSSGAASDQTSSSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	0	1
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10030202 [exp]	1.0	0.9604
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10012221 [exp]	3.0	0.8406
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Lus10007747 [exp]	4.2	0.8707
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	5.2	0.8170
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10016846 [exp]	6.0	0.7906
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10032594 [exp]	7.3	0.7833
AT4G11790			Pleckstrin homology (PH) domai...		Lus10029606 [exp]	8.5	0.7735
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Lus10030212 [exp]	10.9	0.7411
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10027916 [exp]	11.0	0.7802
AT1G67190			F-box/RNI-like superfamily pro...		Lus10020611 [exp]	13.6	0.8308

Compare expression of checked genes

Lus10002684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.