Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46760 655 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46740 630 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 621 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 620 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56490 618 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G11540 446 / 2e-150 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56470 295 / 1e-96 FAD-dependent oxidoreductase family protein (.1) AT3G47930 62 / 5e-10 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) AT1G75450 44 / 0.0004 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030206 [exp] 1078 / 0 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10004735 [exp] 643 / 0 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012610 [exp] 590 / 0 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010105 [exp] 567 / 0 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012609 [exp] 493 / 1e-170 AT2G46760 642 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10038620 [exp] 453 / 2e-153 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10007795 [exp] 175 / 3e-46 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10010106 [exp] 149 / 4e-42 AT2G46760 190 / 4e-58 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10035411 [exp] 66 / 6e-11 AT3G47930 939 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178300 [exp] 694 / 0 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178400 [exp] 685 / 0 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.018G039600 [exp] 467 / 4e-159 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.016G040300 [exp] 66 / 4e-11 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.016G064800 [exp] 49 / 9e-06 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1) Potri.008G084800 [exp] 45 / 0.0002 AT3G19820 993 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) Potri.010G170000 [exp] 44 / 0.0002 AT3G19820 992 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF04030 [flax] [poplar] ALO D-arabinono-1,4-lactone oxidase
Representative CDS sequence Show only first row Show all	>Lus10002688 pacid=23159066 polypeptide=Lus10002688 locus=Lus10002688.g ID=Lus10002688.BGIv1.0 annot-version=v1.0 ATGGCTATATTTCACTTCTTTCTACGGCTCCTAATAGTAATACTATGGACCAATCTGGTGGCGATCGGAAACTGCAGCCTGCCGGCGGAGCCGATCAAAT GCTCGCCGGACTGCACGCTGACCAACACGTTCGGCAATTTCTCCGACCGGAGTATATGCAGAGTCGGCAGAGTGGTGTACCCGATGTCGGAGGAGGAGCT GATCTCGCTGGTGGCGACGGCGACTAAGAAGCGGAGGAAGATGAAAGTCGCCACTCGTTACTCCCACAGCGCGCCCAAACTCGCCTGCCCGGGTGGCGAT GACGGGCTCGTGATCAGCACGCGCAATTTGAATAAGATCCTCCGGATTGATAAAGAGGCGATGACGATTACGGTGGAGAGTGGTGTGTTGCTCAAGGAAA TCGCCGGCGAGGCGGCGAAGTCGGGATTGGCACTGCCGAACTTCCCGTATTATTGGGGGATGACTATCGGGGGCGTGATCAGCACGGGCTCCCACGGCAG TTCGTTCTGGGGTAAAGGCGGCGCGGTGCACGACTATGTGGTCGCGTTGACCATCGTCAGCCCAGGGACGCCACAGGAAGGATCAGCGGTGATAAGGGAT CTCAACGAGGAGGAATTCGCCGACGAATTGAACGCGGCGAAGGTGTCGATCGGGGTACTAGGGGTGATCTACAAGGTGACTTTGAAATTGGAACCTATGT TTAAGAAGAAGGTGTTGTTCGATTCGAAGAGTGATTCGGATTTGGGCGAGGAAGCGATCGGATTCGGGAAGAATTACGAGTTTGGGGACATCATTTGGTA TCCGTTTCAAGGCAAGGCGGTTTATCGAATGGACCGTAGGTGCGTTGTTGATGTTCCGGGTGACGGTGTATGTGATTACATTCCATTTCGAACCATTGAG TCTAAGGATATGGCTTCGAGAAGAGCTATCGATGATGAGATTGAAGCTAATAGGGATGTTGATCAAAGGTGCGATCTAGCCAAACAAGTTGCTGAAAGCT TTCCAGCTGTGGCTTATGGATTCACCAATGATGGCTCTCGATTCGAAGGATATCCGATCATCGGGTACCAAAACAAGCTCCAATCTTCAGGATCGTGTTA CGAAAGCCCTGCAGACGGGTTGACGACGACATGCTCATGGGACTCAAGAATCGACGCGGCCTTCTTCTTCGAGACAAGCTTCAGCATTGCCTTGCCAAAT GTCAAAAACTTCATCAACGACGTACTCAAATTAGTCAAGTTAAACCCTAAGGCCGCCTGTATCATCGACCAGCACAACGGGATCATGATCCGTTACTTGA ACAAGTCGTCGGCATACCTAGGCAGGCCAGAGGAGTCTCTGGTGTTCGACTTCAGCTACTACCGAAGTAGGGACCCCCTGGCTCCTAGACTTTTCGAGGA CCTGATGGAAGAGATCGAACAGATGGGGATAACGAAGTACGAGGGGTTGCCACACTGGGGTAAGAATCGGGTTTTGGCCTTCGATGGGGTGATGGAGAAG TACAAGGAGAATGGTGGAAAGTTTTTGGAAGTGAAGAAGATGTATGATCCTATAGGGTTGTTTTCTAGTGAGTGGAGTGATCAAATTCTTGGGTTGAGAG ATGGTGGTGAAGTGGCTATTTGCAAGGAAGGGTGTGCTTTGGATGGGATGTGTGTTTGCAAAGAGGATGTTCATTGTGCTCCTAGTGAAGGGTATTTTTG TAAACCGGGAAAAGTCTTTGAGGATGCTAGGGTTTGTACTTATGTATCTTAG
AA sequence Show only first row Show all	>Lus10002688 pacid=23159066 polypeptide=Lus10002688 locus=Lus10002688.g ID=Lus10002688.BGIv1.0 annot-version=v1.0 MAIFHFFLRLLIVILWTNLVAIGNCSLPAEPIKCSPDCTLTNTFGNFSDRSICRVGRVVYPMSEEELISLVATATKKRRKMKVATRYSHSAPKLACPGGD DGLVISTRNLNKILRIDKEAMTITVESGVLLKEIAGEAAKSGLALPNFPYYWGMTIGGVISTGSHGSSFWGKGGAVHDYVVALTIVSPGTPQEGSAVIRD LNEEEFADELNAAKVSIGVLGVIYKVTLKLEPMFKKKVLFDSKSDSDLGEEAIGFGKNYEFGDIIWYPFQGKAVYRMDRRCVVDVPGDGVCDYIPFRTIE SKDMASRRAIDDEIEANRDVDQRCDLAKQVAESFPAVAYGFTNDGSRFEGYPIIGYQNKLQSSGSCYESPADGLTTTCSWDSRIDAAFFFETSFSIALPN VKNFINDVLKLVKLNPKAACIIDQHNGIMIRYLNKSSAYLGRPEESLVFDFSYYRSRDPLAPRLFEDLMEEIEQMGITKYEGLPHWGKNRVLAFDGVMEK YKENGGKFLEVKKMYDPIGLFSSEWSDQILGLRDGGEVAICKEGCALDGMCVCKEDVHCAPSEGYFCKPGKVFEDARVCTYVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10002688 [exp]	0	1
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	3.5	0.8956
					Lus10035963 [exp]	3.7	0.8422
AT2G42760			unknown protein		Lus10019924 [exp]	5.3	0.8671
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	7.3	0.8649
					Lus10007554 [exp]	8.0	0.8548
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10022196 [exp]	9.5	0.8541
					Lus10023333 [exp]	10.4	0.8247
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10012611 [exp]	10.5	0.8269
					Lus10018224 [exp]	12.0	0.8297
AT1G06510			unknown protein		Lus10031457 [exp]	12.5	0.7230

Compare expression of checked genes

Lus10002688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.