Plant FIBer expression Database

Lus10002690 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46735 45 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030208
[exp]
104 / 2e-29 AT2G46735 56 / 2e-10 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G178100
[exp]
60 / 5e-12 AT2G46735 61 / 1e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10002690 pacid=23159058 polypeptide=Lus10002690 locus=Lus10002690.g ID=Lus10002690.BGIv1.0 annot-version=v1.0
ATGTGGACGTCGATCCTTCATCCCACACCATTGGTTTCTCCTCCGACACTCACCACCGTCCCCACCAAACCCACCGCTTTCTCCGTCTCCCTTCACCGTC
GGAGCCTCAGCCACCGATTCCACTCTTCCTCAGTTCCTCAACAGGCACAGGAGACGGAGGAGGAAGATAAACAAGAGAGCAGCAGCAGACTACGCGGCTT
GGACGTGCTGTGGGCTATGCAAAAGGCAACCGCCGAGAAGAACAAACTCAAGACTCGGAAGAAAAACAAGTCACCATCATCGTCATCCGCCGCCAGAATC
CAGTTGCCGCCACCGCCGGCAATGGATTACAGCAATGTTAAGCCGCTGTGCATGAAGAGAGAGTGGGGCGTGAAATTGGATGAGCTAGAGAGCCGTCTCC
GCCAGCTCGCTCAGGAGGCCAAATGA
AA sequence
>Lus10002690 pacid=23159058 polypeptide=Lus10002690 locus=Lus10002690.g ID=Lus10002690.BGIv1.0 annot-version=v1.0
MWTSILHPTPLVSPPTLTTVPTKPTAFSVSLHRRSLSHRFHSSSVPQQAQETEEEDKQESSSRLRGLDVLWAMQKATAEKNKLKTRKKNKSPSSSSAARI
QLPPPPAMDYSNVKPLCMKREWGVKLDELESRLRQLAQEAK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G46735 unknown protein Lus10002690
[exp]
0 1
AT2G46735 unknown protein Lus10030208
[exp]
1.0 0.9480
AT1G44575 CP22, PSBS, NPQ... PHOTOSYSTEM II SUBUNIT S, NONP... Lus10025676
[exp]
3.2 0.9438
AT2G35490 Plastid-lipid associated prote... Lus10035384
[exp]
4.2 0.9268
AT1G53670 MSRB1, ATMSRB1 methionine sulfoxide reductase... Lus10013727
[exp]
4.5 0.9358
AT3G25805 unknown protein Lus10022435
[exp]
4.9 0.9412
AT3G16520 UGT88A1 UDP-glucosyl transferase 88A1 ... Lus10039301
[exp]
6.3 0.9176
AT4G27030 FADA, FAD4 FATTY ACID DESATURASE 4, fatty... Lus10017089
[exp]
7.9 0.8936
AT5G17670 alpha/beta-Hydrolases superfam... Lus10020326
[exp]
8.4 0.9334
AT5G01920 STN8 State transition 8, Protein ki... Lus10014183
[exp]
10.2 0.9219
AT5G01920 STN8 State transition 8, Protein ki... Lus10022730
[exp]
11.5 0.9258

Lus10002690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.