Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01140 708 / 0 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT1G30270 626 / 0 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT2G26980 610 / 0 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 605 / 0 Ca2+regulated serine-threonine protein kinase family protein (.1) AT4G24400 504 / 1e-177 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G35410 501 / 2e-176 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT5G45820 434 / 6e-150 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G01810 432 / 1e-149 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT4G30960 428 / 9e-148 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G58380 421 / 1e-144 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030210 [exp] 884 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10042816 [exp] 641 / 0 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 638 / 0 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10022590 [exp] 551 / 0 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10019411 [exp] 526 / 0 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10032822 [exp] 494 / 3e-173 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10021488 [exp] 488 / 2e-172 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10022749 [exp] 449 / 1e-155 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10036280 [exp] 447 / 5e-155 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104200 [exp] 775 / 0 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.002G177900 [exp] 772 / 0 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.001G222600 [exp] 641 / 0 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G062800 [exp] 639 / 0 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 638 / 0 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.009G021000 [exp] 630 / 0 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.018G130500 [exp] 516 / 0 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 504 / 9e-178 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G186200 [exp] 451 / 2e-156 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.010G002500 [exp] 447 / 4e-155 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10002692 pacid=23159079 polypeptide=Lus10002692 locus=Lus10002692.g ID=Lus10002692.BGIv1.0 annot-version=v1.0 ATGAGCATCAAGGTTCAGAAAAGCAGGACGAGGGTCGGGAGGTACGAGCTAGGGAGAACAGTTGGGGAAGGAAGCTTCGCTAAGGTGAAATTCGCCAAGA ACGTCGACACCGGCGACAGCGTCGCCATTAAAATCTTGGATCGCGAGCAAGTCCTCCGTCACAAGATGGTCGAACAGTTGAAAAGAGAGATATCGACTAT GAAGCTCATCAAACATCCAAATGTGGTTAACATATACGAGGTTATGGCAAGCAGGTCCAAGATCTACATTGTTCTCGAGTTTGTGGATGGTGGAGAACTC TTTGACAAAATTGCAAATCATGGTAGGCTTAGAGAAGACGAAGCTAGAAAGTATTTCCAGCAGATCATTAATGCAGTGGACTTCTGCCATAGTAGAGGTG TCTACCATAGAGACTTGAAGCCTGAAAACCTTCTTCTAGATTCATATGGTGTTCTTAAAGTTTCAGATTTTGGGTTGAGTGCATTTGCTCCACAATTGAG GGGGGATGGACTTCTTCACACAGCATGTGGAACCCCAAACTATGTTGCTCCAGAGGTTCTCAAAGACAAAGGCTACGACGGTTCTGCATCCGACATTTGG TCGTGCGGGGTCATCCTGTTCGTGCTAATGGCAGGATACTTGGCGTTCGACGAGCCGAATCTTATGACTTTGTACCAAAAGGTGGATAAAAATCTTATGG AGTTTGAAATGCACTACCTTCTTGACATGTTGATCTGCAATGCTGATTTCACATTTCCATCATGGTTTTCGCCCGGTTCGAAGAAATTAATAAAGAGAAT ACTCGATCCGAACCCACTTACCAGGATTACCATTGCTGAGATCTTAGAGGATGAATGGTTCAAGAAAGGGTACCAGCCGCCACATTTCGAGCAGGAAGAG GATATAAATCTAGACGATGTCGATGCTGTTTTCAACAACTCCAAGGATCACCTTGTAACCGAAAGGAAGGAGAAACCGGAGTCAATGAACGCTTTCGAGC TTATCTCTAGGACGCAGAGCTTCAGTCTGGACAAGTTGTTCGAGAAGCAAGCAGTGAAGAGAGAGACCTGTTTCGCTTCCAATAGCCCTGCTAACGAACT GATGTCGAGAATCGAGGAAGCTGCAAAGCCTCTAGGATTTAATGTCAACAAGAGAAACTACAAGATGAAACTGAAAGGTGACAAAAGTGGAAGGAAAGGT CAACTTTCAGTGGCTACTGAGGTGTTTGAGGTAGCTCCCTCACTTCACATGGTAGAGCTCCGGAAACTCGGAGGCGATACGCTGGAATTCCACAAGTTCT ACAAGAGTTTCTCGTCGGGACTAAAAGATGTGGTTTGGAAGTCTGATTCCACCATTGACGGGTTGAAGTAG
AA sequence Show only first row Show all	>Lus10002692 pacid=23159079 polypeptide=Lus10002692 locus=Lus10002692.g ID=Lus10002692.BGIv1.0 annot-version=v1.0 MSIKVQKSRTRVGRYELGRTVGEGSFAKVKFAKNVDTGDSVAIKILDREQVLRHKMVEQLKREISTMKLIKHPNVVNIYEVMASRSKIYIVLEFVDGGEL FDKIANHGRLREDEARKYFQQIINAVDFCHSRGVYHRDLKPENLLLDSYGVLKVSDFGLSAFAPQLRGDGLLHTACGTPNYVAPEVLKDKGYDGSASDIW SCGVILFVLMAGYLAFDEPNLMTLYQKVDKNLMEFEMHYLLDMLICNADFTFPSWFSPGSKKLIKRILDPNPLTRITIAEILEDEWFKKGYQPPHFEQEE DINLDDVDAVFNNSKDHLVTERKEKPESMNAFELISRTQSFSLDKLFEKQAVKRETCFASNSPANELMSRIEEAAKPLGFNVNKRNYKMKLKGDKSGRKG QLSVATEVFEVAPSLHMVELRKLGGDTLEFHKFYKSFSSGLKDVVWKSDSTIDGLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10002692 [exp]	0	1
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	1.4	0.8607
AT2G38660			Amino acid dehydrogenase famil...		Lus10043398 [exp]	3.2	0.7980
AT3G24760			Galactose oxidase/kelch repeat...		Lus10025938 [exp]	7.1	0.8177
					Lus10012564 [exp]	8.1	0.7882
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030210 [exp]	9.6	0.8138
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	10.2	0.7864
AT1G78230			Outer arm dynein light chain 1...		Lus10020932 [exp]	15.7	0.7292
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10037374 [exp]	17.0	0.7365
AT4G14385			unknown protein		Lus10011821 [exp]	22.3	0.7864
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10013789 [exp]	22.7	0.7997

Compare expression of checked genes

Lus10002692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.