Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01150 52 / 2e-08 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000100 [exp] 213 / 3e-72 ND 39 / 4e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104100 [exp] 64 / 3e-14 ND / Potri.002G177700 [exp] 61 / 4e-13 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002693 pacid=23159074 polypeptide=Lus10002693 locus=Lus10002693.g ID=Lus10002693.BGIv1.0 annot-version=v1.0 ATGGGGAGGGACAAGGAAGATAACAATGATAATGTGGGAGATCATGGAGAAGAAGGGAGTAGTATGAGTAGGAGGAATATAACAAAGTGGATGATGAGGA AGGATGGAACGGCGTCGTTTTGGTGTATCGGATGTGGAATATTGAGCTTGGTGGGAGGTGTGGTTTTGGGCTGGTGGGAGTACAAGTATCATCGAACCAA CTCTCAACAATGGATGGTTCCCTTTGGTTTGATTTTGTTCGCAACTCCCTTGTTCGTTTGGCTCGCAGTTATCGTCTCTGATTTTTGCAACGAAGAAGAC GGTCTTGGTGGCGGCGGCGGAGGGTCACCGGAGACCACGGGTCAAGTCGTGGTGTGTGACTCGGTAGTGAGGATGAATAATAAAGATGTCACAACTTTGT ACCATATGAAAGGAGAAAATATAGTGTGA
AA sequence Show only first row Show all	>Lus10002693 pacid=23159074 polypeptide=Lus10002693 locus=Lus10002693.g ID=Lus10002693.BGIv1.0 annot-version=v1.0 MGRDKEDNNDNVGDHGEEGSSMSRRNITKWMMRKDGTASFWCIGCGILSLVGGVVLGWWEYKYHRTNSQQWMVPFGLILFATPLFVWLAVIVSDFCNEED GLGGGGGGSPETTGQVVVCDSVVRMNNKDVTTLYHMKGENIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002693 [exp]	0	1
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10013917 [exp]	2.6	0.9529
AT5G65980			Auxin efflux carrier family pr...		Lus10012708 [exp]	3.7	0.9504
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10010573 [exp]	6.0	0.9267
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025991 [exp]	7.1	0.9436
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	10.0	0.9468
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	10.4	0.9418
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	10.8	0.9492
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025990 [exp]	12.2	0.9372
AT2G16750			Protein kinase protein with ad...		Lus10014122 [exp]	14.5	0.9359
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10006405 [exp]	16.6	0.9230

Compare expression of checked genes

Lus10002693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.