Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00840 322 / 1e-109 DHHC-type zinc finger family protein (.1) AT3G60800 278 / 2e-92 DHHC-type zinc finger family protein (.1) AT4G22750 263 / 2e-86 DHHC-type zinc finger family protein (.1.2) AT4G22753 257 / 1e-80 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT3G09320 99 / 1e-23 DHHC-type zinc finger family protein (.1) AT5G04270 79 / 9e-17 DHHC-type zinc finger family protein (.1) AT4G24630 77 / 2e-15 DHHC-type zinc finger family protein (.1) AT5G50020 74 / 2e-14 DHHC-type zinc finger family protein (.1.2) AT5G41060 70 / 5e-13 DHHC-type zinc finger family protein (.1.2) AT3G26935 70 / 6e-13 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024561 [exp] 279 / 2e-92 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 277 / 1e-91 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10030211 [exp] 250 / 2e-83 AT4G00840 159 / 5e-49 DHHC-type zinc finger family protein (.1) Lus10015872 [exp] 143 / 2e-40 AT4G22750 241 / 4e-88 DHHC-type zinc finger family protein (.1.2) Lus10009291 [exp] 114 / 3e-30 AT3G60800 202 / 3e-65 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 100 / 3e-24 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 97 / 6e-23 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 88 / 1e-19 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10027274 [exp] 73 / 7e-14 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104000 [exp] 356 / 5e-123 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.014G069200 [exp] 287 / 7e-96 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.001G117100 [exp] 268 / 3e-88 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 268 / 5e-88 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 253 / 3e-82 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.006G087400 [exp] 101 / 1e-24 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 97 / 8e-23 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 90 / 2e-20 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 74 / 2e-14 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.003G160600 [exp] 73 / 4e-14 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10002694 pacid=23159059 polypeptide=Lus10002694 locus=Lus10002694.g ID=Lus10002694.BGIv1.0 annot-version=v1.0 ATGCGCCTAGTCCTGGCTCCGATTAACTGGAACCGCCTATTCCCGAAGCGGACCCGACCGCCGCCAGCACAGCAGCTCATTCCGATCATCATTCCTCCAA GTATTCGCCGCCGCTTCGGTCTAGGAATGGAGATTAACGCGTTCAAGTTCTGCTCCGGGCTGAGAGTCATTGGCTACTTCATGATCGTCCTCGTCGCCGG GATAATCGGCGTCTCGTATTACGCCGTGATAGTCGTTGTCTGGGGTCCTCAGCTGCTCTGCGGCGGCGCGCGGTCGGCTCTGGCCTTGTTCTTAGTCGTC CCGTTTCATTTTCTGCTTGCAATGCTTATATGGAGCTATTTTAGGGTTGTTATCCAAGACCCTGGCTCAGTGCCGGAGAATTGGAGAGCAACATTGTCAG GGGAGAGTTTGGAAGCGTTGGATGCTAGAGTTTCTGAGGATTCCAGCTTTGGAGGAGGATCGGATAGGAGAGCTGGATATTGCAATCGTTGTCGGAACGG AAAGCCTCCTCGCTGCCATCATTGTTCTGTCTGTCAAAGATGTGTTCTTAAGATGGATCACCATTGTGTATGGGTGGTGAATTGCATTGGTGCAGGCAAC TACAAGTTCTTTCTTCTTTTCTTGTTGTACACGTTTCTTGAGACGACACTTGGGACTTTAGCGTTGCTGCCGAGTTTCATCAAGTTCTTTGACCACAGCA AGAATTTATCGACCTCTCCTGGTGATCTAGCAACCACTTTCATGGCTTTTGTTCTTAACTTGGCTTTTGCTGCAAGTCTTCTTTTTTTCATCGTGATGCA TGCATCTCTTCTGCTGAGCAACACCACTTCCATCGAGGTGCACGAGAAGAAGGGAGTTGTCAGGTGGAAATATGACCTGGGAAGGAAGAAGAATTTCGAA CAGGTGATTACTCGAATTCCTTCGATGCAGTATTTTGTAACTGCGATAGTCCACGAAGTTTTCGGCACGAAAAGGGCTCTATGGCTCGTCCCACTGTTTT CTGCCGACGATCTGACCAACATGGCTGCACTAAAAGGGCTAGATTTTCCCACACGCAGTGATGCTGAGGCTTGA
AA sequence Show only first row Show all	>Lus10002694 pacid=23159059 polypeptide=Lus10002694 locus=Lus10002694.g ID=Lus10002694.BGIv1.0 annot-version=v1.0 MRLVLAPINWNRLFPKRTRPPPAQQLIPIIIPPSIRRRFGLGMEINAFKFCSGLRVIGYFMIVLVAGIIGVSYYAVIVVVWGPQLLCGGARSALALFLVV PFHFLLAMLIWSYFRVVIQDPGSVPENWRATLSGESLEALDARVSEDSSFGGGSDRRAGYCNRCRNGKPPRCHHCSVCQRCVLKMDHHCVWVVNCIGAGN YKFFLLFLLYTFLETTLGTLALLPSFIKFFDHSKNLSTSPGDLATTFMAFVLNLAFAASLLFFIVMHASLLLSNTTSIEVHEKKGVVRWKYDLGRKKNFE QVITRIPSMQYFVTAIVHEVFGTKRALWLVPLFSADDLTNMAALKGLDFPTRSDAEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00840			DHHC-type zinc finger family p...		Lus10002694 [exp]	0	1
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	3.5	0.8858
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	8.5	0.8473
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	9.3	0.8712
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Lus10020760 [exp]	10.4	0.8426
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036500 [exp]	13.9	0.8168
AT2G16460			Protein of unknown function (D...		Lus10018079 [exp]	16.5	0.8361
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	17.0	0.8573
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	17.3	0.8659
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	19.2	0.8680
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024174 [exp]	19.6	0.8477

Compare expression of checked genes

Lus10002694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.