Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39650 299 / 2e-101 Protein of unknown function (DUF506) (.1) AT4G14620 136 / 2e-37 Protein of unknown function (DUF506) (.1) AT2G38820 127 / 3e-34 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G22970 123 / 2e-33 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G32480 117 / 6e-31 Protein of unknown function (DUF506) (.1) AT3G07350 117 / 1e-30 Protein of unknown function (DUF506) (.1) AT3G25240 115 / 4e-30 Protein of unknown function (DUF506) (.1) AT3G54550 110 / 3e-28 Protein of unknown function (DUF506) (.1) AT2G20670 110 / 4e-28 Protein of unknown function (DUF506) (.1) AT1G12030 100 / 4e-24 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000956 [exp] 444 / 1e-159 AT2G39650 266 / 1e-89 Protein of unknown function (DUF506) (.1) Lus10023412 [exp] 352 / 3e-122 AT2G39650 273 / 2e-91 Protein of unknown function (DUF506) (.1) Lus10040293 [exp] 341 / 1e-117 AT2G39650 270 / 5e-90 Protein of unknown function (DUF506) (.1) Lus10014718 [exp] 132 / 6e-36 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10006634 [exp] 132 / 3e-35 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10039397 [exp] 132 / 4e-35 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 130 / 5e-35 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 126 / 2e-33 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 125 / 7e-33 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G056100 [exp] 392 / 8e-138 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1) Potri.010G203700 [exp] 375 / 4e-131 AT2G39650 287 / 9e-97 Protein of unknown function (DUF506) (.1) Potri.002G046300 [exp] 141 / 4e-39 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 138 / 9e-38 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G159800 [exp] 127 / 1e-33 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.007G109700 [exp] 120 / 2e-32 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G080600 [exp] 120 / 3e-31 AT3G22970 371 / 3e-127 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G058200 [exp] 117 / 3e-31 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.019G099600 [exp] 115 / 4e-30 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1) Potri.005G188100 [exp] 114 / 4e-30 AT1G77160 169 / 8e-52 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10002695 pacid=23180554 polypeptide=Lus10002695 locus=Lus10002695.g ID=Lus10002695.BGIv1.0 annot-version=v1.0 ATGTGTGCGGCGACGGCAACAGGGGACTGGTGGGGGAGAGGGATGGTGGTGGGGCAGATCGGGGGAGGATTCAGCCACGAGAGCGAGCTTGACTTGGCCC TGCTCGTCAGCGATTTCCTCGAGAACGGCGGAAGCAGCGGCGCCGATTCCCGATGCAGTAGCGACAGCGAGTCGGGAATCTCCGATCCTCATTGTCTTGC CAATAAGATTTTGTTCTATAAACACTCGGTGGCCCCCCATGAGAGCGAATTGATGTCACTAGTTCATTCTCTCATTGTCTCATTAAAAGATACGGACCTT CGTCTTGTGGAGTCGGGTTCTTGTAATGCCAGCTGCATCAGGTTTTCTTTGGTGAAGCTGCTGCGATTTTCAGGATATGATGCTGCTGTCTGCTCATCTA AATGGCAGGGCATTGCCAAAGTCCCAGGTGGTGATTATGAGTACATTGATGTGATCAATCTCAATGATGCTGGAAGCTCGGAACGTCTGATAGTTGATAT AGACTTCAGAAGTCACTTTGAAATAGCTAGAGCTGTCGATTCATACGATCGACTACTGCAGTCACTTCCGGTTGTTTATGTGGGATCCTTGGGTAGGCTG AAGCAGTATCTCCAGGTGATGGTGGAAGCGGCCAAGTCATCGCTTAAACAAAACTCGATGCCTCTTCCTCCTTGGAGGTCCCTTGCATATTTGCAAGCGA AATGGCAGTCACCACATCAGAGACACTTCTTCGCTCCAGATGGACACAGCATTTCCACGTCTGGGGGACACAAGCAGTGCAGTGGGCAACTCAGGAGGCT GCAATTCTCTCTTCACTCTGAAGTTGAGGAAGAACGTCTCCTGAAGCCTCTGAAAGGCGACAATAACAGACGGGCAAAGCCCGATAGACGTAGATACTCC TTGTTCAGGGGTCTCTAA
AA sequence Show only first row Show all	>Lus10002695 pacid=23180554 polypeptide=Lus10002695 locus=Lus10002695.g ID=Lus10002695.BGIv1.0 annot-version=v1.0 MCAATATGDWWGRGMVVGQIGGGFSHESELDLALLVSDFLENGGSSGADSRCSSDSESGISDPHCLANKILFYKHSVAPHESELMSLVHSLIVSLKDTDL RLVESGSCNASCIRFSLVKLLRFSGYDAAVCSSKWQGIAKVPGGDYEYIDVINLNDAGSSERLIVDIDFRSHFEIARAVDSYDRLLQSLPVVYVGSLGRL KQYLQVMVEAAKSSLKQNSMPLPPWRSLAYLQAKWQSPHQRHFFAPDGHSISTSGGHKQCSGQLRRLQFSLHSEVEEERLLKPLKGDNNRRAKPDRRRYS LFRGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39650			Protein of unknown function (D...		Lus10002695 [exp]	0	1
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041685 [exp]	1.0	0.9202
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	1.4	0.9033
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10000900 [exp]	5.0	0.8873
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029438 [exp]	5.7	0.8737
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10013842 [exp]	7.0	0.8830
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Lus10022590 [exp]	9.4	0.8674
AT2G47485			unknown protein		Lus10028487 [exp]	9.5	0.8629
AT5G50175			unknown protein		Lus10043318 [exp]	10.9	0.8594
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	15.4	0.8332
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10016717 [exp]	17.3	0.8497

Compare expression of checked genes

Lus10002695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.