Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12530 176 / 3e-55 PSF2 PSF2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000955 [exp] 175 / 5e-55 AT3G12530 187 / 2e-60 PSF2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G203600 [exp] 253 / 1e-85 AT3G12530 269 / 3e-92 PSF2 (.1.2) Potri.008G056200 [exp] 189 / 7e-61 AT3G12530 199 / 2e-65 PSF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05916 [flax] [poplar] Sld5 GINS complex protein
Representative CDS sequence Show only first row Show all	>Lus10002696 pacid=23180549 polypeptide=Lus10002696 locus=Lus10002696.g ID=Lus10002696.BGIv1.0 annot-version=v1.0 ATGAGTTCGCCAAATAATAGTCCTCTTTGTTACCCTCATTTCCCGCCTCTATTCTACTCATTCCTCATTTCCCGCGTCCCAGCTTTCCACACTCCCCGCA GGCCAACGCCGCCGATTATTTTCTTCTTCATCAATTCAAAATTGGCCTCAATCAAATCACCAACCACATCTCTCAAATCGCCTCCAAGAATGGCTGGTCA GTCTGGCTCCCAACTCTCCCTCTTCACCCCGGAAGAGGTGGAGTTCATGGCCGAAGATGAGTTGCTCGAGATCGTCCCCAATCTGAGAATGGATTCTCTT AATTTCATCTGTGGAGATTACGGTCCCTTTTACCCACAAATAGCAGCCCAAGTTCCTTTATGGTTGGCTGGTGCGCTGAAGAAGCGAGGCAAGTGCACCA TCCGTCCCCCGCAATGGATGTCCGTCGAGGACATCAGGGACGTGAGGTTTCACAAGGTGGAAACAAATTTGGAAAACTTCACTGCATCTGCAGTAACGTG GAAAAATATGGCTGCTATGGAAGTGAATATAATCCGTGCCTTTTCTGGGAGAGCCCTGCAAGTGTTCTACAAGCATGAGAATGAGCAGCTAATGCCAGAT CCGGATAGAACCCAGGATAGACAGCCGCAAAATCTTAATGACAGGCCCAGAGTATGTTTCTTCTACTATTTCTCCTACTCAACTATGATCAATGCTGGCT AG
AA sequence Show only first row Show all	>Lus10002696 pacid=23180549 polypeptide=Lus10002696 locus=Lus10002696.g ID=Lus10002696.BGIv1.0 annot-version=v1.0 MSSPNNSPLCYPHFPPLFYSFLISRVPAFHTPRRPTPPIIFFFINSKLASIKSPTTSLKSPPRMAGQSGSQLSLFTPEEVEFMAEDELLEIVPNLRMDSL NFICGDYGPFYPQIAAQVPLWLAGALKKRGKCTIRPPQWMSVEDIRDVRFHKVETNLENFTASAVTWKNMAAMEVNIIRAFSGRALQVFYKHENEQLMPD PDRTQDRQPQNLNDRPRVCFFYYFSYSTMINAG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12530		PSF2	PSF2 (.1.2)		Lus10002696 [exp]	0	1
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10010323 [exp]	4.2	0.9097
AT3G16080			Zinc-binding ribosomal protein...		Lus10011446 [exp]	7.1	0.9056
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10004945 [exp]	7.5	0.9313
AT3G53730			Histone superfamily protein (....		Lus10023331 [exp]	9.6	0.9155
AT5G02570			Histone superfamily protein (....		Lus10040850 [exp]	11.9	0.9179
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10010946 [exp]	12.0	0.9132
AT3G48710			DEK domain-containing chromati...		Lus10022439 [exp]	15.2	0.8935
AT1G09200			Histone superfamily protein (....		Lus10005270 [exp]	18.9	0.9182
AT4G40030			Histone superfamily protein (....		Lus10013946 [exp]	19.1	0.9052
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10031383 [exp]	19.5	0.9138

Compare expression of checked genes

Lus10002696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.