Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07570 535 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 528 / 0 APK1B protein kinase 1B (.1.2.3) AT5G02290 523 / 0 NAK Protein kinase superfamily protein (.1.2) AT2G39660 509 / 0 BIK1 botrytis-induced kinase1 (.1) AT2G02800 473 / 1e-166 Kin2, APK2B protein kinase 2B (.1.2) AT3G55450 470 / 5e-166 PBL1 PBS1-like 1 (.1.2) AT1G14370 463 / 1e-162 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT5G15080 455 / 2e-158 Protein kinase superfamily protein (.1) AT3G01300 453 / 1e-157 Protein kinase superfamily protein (.1) AT1G69790 449 / 2e-157 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000954 [exp] 758 / 0 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10016537 [exp] 554 / 0 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10040806 [exp] 549 / 0 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10023794 [exp] 538 / 0 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 532 / 0 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 531 / 0 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10004964 [exp] 516 / 0 AT2G28930 570 / 0.0 protein kinase 1B (.1.2.3) Lus10005462 [exp] 513 / 0 AT2G28930 569 / 0.0 protein kinase 1B (.1.2.3) Lus10012850 [exp] 460 / 3e-161 AT2G02800 614 / 0.0 protein kinase 2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G203400 [exp] 581 / 0 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 575 / 0 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G031300 [exp] 561 / 0 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.001G240400 [exp] 553 / 0 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G094300 [exp] 546 / 0 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G148000 [exp] 485 / 3e-171 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.010G093700 [exp] 484 / 5e-171 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G194700 [exp] 452 / 1e-157 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 450 / 8e-157 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 448 / 9e-156 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10002697 pacid=23180550 polypeptide=Lus10002697 locus=Lus10002697.g ID=Lus10002697.BGIv1.0 annot-version=v1.0 ATGGGTTCGTGCTTGAGTTCCAGCATCGATGGGGGGAAGAAAGAGGGGAGTGCTGGGTCAACAAGCAGGGTATCAGCATCAGGGGGGACTGTTCCATATA CTCCTAGGACGGAAGGGGAGATATTACAGTCAAGCAACTTGAAGAGCTTTACGTTTGGTGATCTAAAGGCATCTACAAGGAACTTCCGTCCGGATAGTTT GATAGGGGAAGGTGGGTTTGGTTGTGTTTTCAAAGGATGGGTTGATGAGAATTCACTCACTGCTGTCAGGCCTGGCACTGGCTTGGTCATTGCTGTCAAA AGACTCAACCAAGAGAGCTTCCAGGGTCACCAGGAATGGCTGGCGGAAATCAATTACCTGGGGCAGCTGGACCATCCAAACCTTGTGAAATTGGTCGGCT ACTGCATTGAGGATGAGCACAGGCTTCTAGTTTACGAGTTCATGCCTAAGGGCAGCTTGGAAAATCATCTTTTCAGAAGGGCTTCTTATTTCCAACCTTT ATCTTGGAACCTTCGTATGAAGGTTGCAGTTGATGCCGCCAGAGGTCTAGCATTCCTTCACAGCGACAAGGCCAAAGTTATCTACCGCGATTTCAAGACT TCTAACATCCTCCTCGATTCGAACTACAATGCAAAACTGTCCGATTTCGGGTTAGCCAAGGACGGTCCATCGGGAAGCAAGAGCCACGTCTCGACAAGAG TGATGGGAACATACGGATACGCAGCTCCGGAGTACATGGCGACGGGACATCTAACATCAAAGAGCGACGTGTACAGTTTCGGAGTGGTGCTGCTGGAGAT ATTGTCGGGAAGGAGAGCGATAGACAAGAACAGGCCGTCGAGGGAGAAGAGCTTAGTGGATTGGGCGAGGCCGTACCTGGGAAGCAAAAGGAAGATATAC CAAGTGATGGATGCTAGGATTGAAGGGCAGTACACGGGAACTTGCGCGATGAAAGTGTCTACATTAGCAGTGAGATGCCTGTCAATGGAGGCCAAGTACA GACCTAACATGGAGGAAGTTGTTAGAACTTTGGAGCAGATTTACCATGAGTGCAGCGAGAGTAGTGAAGGTATGAAAGGGAACATCAACAATAATAATCA TCAAAAGGCAAGAATAAGGAAGAATGTGAATGGAGGAGTTGTGGTGGGTAATGGCAAAGCTTCTCCCAGACCTGCAGCATCTCCTCTCCGAGTATAG
AA sequence Show only first row Show all	>Lus10002697 pacid=23180550 polypeptide=Lus10002697 locus=Lus10002697.g ID=Lus10002697.BGIv1.0 annot-version=v1.0 MGSCLSSSIDGGKKEGSAGSTSRVSASGGTVPYTPRTEGEILQSSNLKSFTFGDLKASTRNFRPDSLIGEGGFGCVFKGWVDENSLTAVRPGTGLVIAVK RLNQESFQGHQEWLAEINYLGQLDHPNLVKLVGYCIEDEHRLLVYEFMPKGSLENHLFRRASYFQPLSWNLRMKVAVDAARGLAFLHSDKAKVIYRDFKT SNILLDSNYNAKLSDFGLAKDGPSGSKSHVSTRVMGTYGYAAPEYMATGHLTSKSDVYSFGVVLLEILSGRRAIDKNRPSREKSLVDWARPYLGSKRKIY QVMDARIEGQYTGTCAMKVSTLAVRCLSMEAKYRPNMEEVVRTLEQIYHECSESSEGMKGNINNNNHQKARIRKNVNGGVVVGNGKASPRPAASPLRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	0	1
AT2G20630		PIA1	PP2C induced by AVRRPM1 (.1.2)		Lus10032673 [exp]	1.0	0.9631
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	2.0	0.9603
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	2.4	0.9548
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	4.0	0.9434
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	4.6	0.9359
AT4G28400			Protein phosphatase 2C family ...		Lus10008556 [exp]	4.9	0.9537
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Lus10018850 [exp]	5.0	0.9346
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10034577 [exp]	5.5	0.9456
AT5G55530			Calcium-dependent lipid-bindin...		Lus10003765 [exp]	5.8	0.9290
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10019262 [exp]	6.9	0.9405

Compare expression of checked genes

Lus10002697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.