Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39670 589 / 0 Radical SAM superfamily protein (.1.2) AT3G19630 197 / 3e-59 Radical SAM superfamily protein (.1) AT1G60230 177 / 9e-51 Radical SAM superfamily protein (.1) AT1G50050 63 / 3e-11 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000953 [exp] 823 / 0 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10020989 [exp] 189 / 5e-56 AT3G19630 569 / 0.0 Radical SAM superfamily protein (.1) Lus10005409 [exp] 187 / 2e-55 AT3G19630 568 / 0.0 Radical SAM superfamily protein (.1) Lus10013005 [exp] 152 / 2e-41 AT1G60230 582 / 0.0 Radical SAM superfamily protein (.1) Lus10029159 [exp] 122 / 2e-30 AT1G60230 468 / 2e-163 Radical SAM superfamily protein (.1) Lus10000081 [exp] 82 / 5e-18 AT1G60230 332 / 9e-114 Radical SAM superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G056500 [exp] 658 / 0 AT2G39670 622 / 0.0 Radical SAM superfamily protein (.1.2) Potri.010G203300 [exp] 228 / 2e-71 AT2G39670 238 / 2e-75 Radical SAM superfamily protein (.1.2) Potri.001G294900 [exp] 191 / 7e-57 AT3G19630 577 / 0.0 Radical SAM superfamily protein (.1) Potri.010G040700 [exp] 180 / 8e-52 AT1G60230 583 / 0.0 Radical SAM superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily
Representative CDS sequence Show only first row Show all	>Lus10002698 pacid=23180553 polypeptide=Lus10002698 locus=Lus10002698.g ID=Lus10002698.BGIv1.0 annot-version=v1.0 ATGATTGCTGCTGCTTCCACATCGCTATTCCAGCATGTCTGCTCCGCCTCCGTCGCCACCGTCGTCCGTCCTGGATTCCGTTCCCTCTCCGTCGCTTCTG TTCGTAACCTCTCCACCGCAGCCGCAGCCGTCTCCTCAGCTAAGTCGGTCTCAGTTTCTCAGCTGGATACTCGAGTTCTCCTTGGGTTGTCGGAACCGGA GCTTCAACAGCTTGCTCTAGACCTCGGCCAGGAGGGCTACAGAGGGAAGCAGCTTCATCACTTAATTTACAAAAGGAAAGTTAAGGAAGTCGATGATTTT ATTCAGTTGCCTCAAGCATTTAGAAGTGTTCTTCAAGAATCCGGGTGGAGAGTTGGCCGGTCTCCAGTCTTTCAAACTGTTACAGCTGCTGATGGTACTG TTAAGTTATTGATCAAACTGGAGGACAACAGACTGGTTGAAACTGTGGGCATTCCCGTGACAGATAATAAAGGTTCAATGCGTCTCACTGCATGCGTCTC CTCCCAGGTAGGATGCCCACTGCGTTGCTCATTTTGTGCCACTGGAAAGGGAGGATATTCAAGGAATCTTCAAGCACATGAAATTGTTGAGCAGGTTTTA GCTATTGAAGAGATCTTTAAGCACAGGGTGACAAATGTAGTATTCATGGGTATGGGTGAACCTATGTTGAACTTAAAGGCAGTACTTGGAGCACACCGAT GCTTAAATAAGGATGTTGATATTGGGCAGAGAATGATAACCATATCCACAGTTGGGGTTCCTAATACGATCAAGAAATTGGCAACCCATAAGCTTCAGTC AACTTTGGCCTTCAGCATACACGCTCCTAATCAGAAACTGAGAGAAACAATAGTGCCAAGTGCGAAATCATATCCTCTAGATGCCATAATGAAAGACTGC AGGGACTATTTTGTTCAAACTAGTAGACGGGTATCCTTCGAGTATGCTCTTTTAGCTGGGGTTAATGATAAGACGGAGCACGCTATCGAACTTGCTGAGC TATTGAATAATTGGGGACGTAATTATCATGTGAACCTTATACCTTTCAATCCGATTGAAGGTTCTGATTATCAACGTCCGACTAAAAGAGGGGTGCAAAA TTTTGCTTCCACGCTACAGGCACGTAAAATAACAGTAAGCATTCGTAAGACTAGGGGCATGGATGCCAGTGCAGCTTGTGGTCAACTACGAAATCAGTTC CAGAAAAGTCCTTTACTTACTGCTGAGCCAGACATCTCTCCACCTGAGGCCGAGCTTGCAGTTACATGCTAA
AA sequence Show only first row Show all	>Lus10002698 pacid=23180553 polypeptide=Lus10002698 locus=Lus10002698.g ID=Lus10002698.BGIv1.0 annot-version=v1.0 MIAAASTSLFQHVCSASVATVVRPGFRSLSVASVRNLSTAAAAVSSAKSVSVSQLDTRVLLGLSEPELQQLALDLGQEGYRGKQLHHLIYKRKVKEVDDF IQLPQAFRSVLQESGWRVGRSPVFQTVTAADGTVKLLIKLEDNRLVETVGIPVTDNKGSMRLTACVSSQVGCPLRCSFCATGKGGYSRNLQAHEIVEQVL AIEEIFKHRVTNVVFMGMGEPMLNLKAVLGAHRCLNKDVDIGQRMITISTVGVPNTIKKLATHKLQSTLAFSIHAPNQKLRETIVPSAKSYPLDAIMKDC RDYFVQTSRRVSFEYALLAGVNDKTEHAIELAELLNNWGRNYHVNLIPFNPIEGSDYQRPTKRGVQNFASTLQARKITVSIRKTRGMDASAACGQLRNQF QKSPLLTAEPDISPPEAELAVTC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39670			Radical SAM superfamily protei...		Lus10002698 [exp]	0	1
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	1.7	0.7804
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Lus10021748 [exp]	2.4	0.8000
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10000232 [exp]	6.9	0.7748
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10039267 [exp]	8.5	0.8228
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023056 [exp]	17.5	0.7673
AT4G33480			unknown protein		Lus10002086 [exp]	17.7	0.7235
AT3G13690			Protein kinase protein with ad...		Lus10006148 [exp]	19.2	0.7270
AT4G33760			tRNA synthetase class II (D, K...		Lus10037243 [exp]	21.7	0.7559
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Lus10006454 [exp]	25.0	0.7391
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10008616 [exp]	26.2	0.7460

Compare expression of checked genes

Lus10002698 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.