Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55460 134 / 7e-38 SCL30, At-SCL30 SC35-like splicing factor 30 (.1) AT3G13570 115 / 2e-30 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT1G55310 111 / 2e-29 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT5G18810 106 / 2e-27 SCL28, At-SCL28 SC35-like splicing factor 28 (.1) AT2G21440 71 / 2e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G64200 66 / 4e-12 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT3G10400 64 / 7e-12 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT3G47120 56 / 1e-08 C3HZnF RNA recognition motif (RRM)-containing protein (.1) AT5G09880 56 / 1e-08 Splicing factor, CC1-like (.1) AT3G11400 54 / 4e-08 ATEIF3G1, EIF3G1 eukaryotic translation initiation factor 3G1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000953 [exp] 284 / 2e-90 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10029328 [exp] 66 / 9e-13 AT1G55310 160 / 2e-49 SC35-like splicing factor 33 (.1.2.3) Lus10012932 [exp] 66 / 1e-12 AT3G13570 174 / 1e-53 SC35-like splicing factor 30A (.1) Lus10023802 [exp] 64 / 1e-11 AT5G64200 217 / 1e-68 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10003957 [exp] 64 / 1e-11 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10042589 [exp] 65 / 2e-11 AT2G21440 825 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022044 [exp] 65 / 2e-11 AT2G21440 832 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000826 [exp] 62 / 1e-10 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10002093 [exp] 62 / 1e-10 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G203200 [exp] 197 / 4e-62 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.008G056600 [exp] 186 / 8e-58 AT3G55460 134 / 6e-38 SC35-like splicing factor 30 (.1) Potri.001G006400 [exp] 120 / 2e-32 AT3G13570 170 / 3e-52 SC35-like splicing factor 30A (.1) Potri.003G218600 [exp] 120 / 2e-32 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.016G062500 [exp] 118 / 3e-32 AT3G13570 167 / 9e-52 SC35-like splicing factor 30A (.1) Potri.006G197000 [exp] 114 / 1e-30 AT1G55310 187 / 8e-59 SC35-like splicing factor 33 (.1.2.3) Potri.010G026100 [exp] 109 / 2e-28 AT5G18810 172 / 2e-53 SC35-like splicing factor 28 (.1) Potri.008G196700 [exp] 107 / 2e-27 AT5G18810 168 / 8e-52 SC35-like splicing factor 28 (.1) Potri.005G165400 [exp] 66 / 2e-12 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.003G023800 [exp] 66 / 2e-12 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10002699 pacid=23180546 polypeptide=Lus10002699 locus=Lus10002699.g ID=Lus10002699.BGIv1.0 annot-version=v1.0 ATGAGGAGGTACAGCCCACAGCAATACAGTCCACCAAGGAGAGGATATGGAGGTCGACCTAGGAGCCCACCTAGGAGTCCACCTAGGAGAGGATATGGTG GAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGTGGTGGAGGTGGCTATGGTCGGCGTAGAGACCAGAATCAAGGCAGCCTGTTGGTTCGCAATAT TCCTCTTGATTGCAGGCAAGAAGAGCTCAGGACTCTGTTCCAACGATTTGGAGCTCTAAGAGATGTATACATGCCAAAGGACTATCACACAGGGGAACCT CGAGGTTTTGCATTTGTACAATTTGTGGAACCATATGACTCCATTGAAGCTCAGCGTCGTGTGAATGGGCAGATATTTGCTGGGAGGGAAATATCTGTAG TGGTAGCAGCAGAGTCAAGGAAAAGACCTGAGGATATGCGCCATAGAACTCGGTCCAGGGGAGGAGGCCGTGGAGGTGGGTCATCTTATTATGGACGCTC TCGTTCCCGTTCGCTATCGCGGTCACGCTCTCCTCGTTATCCCGAGTCTAGATCTAGATACCGTTCAAGGTCTTACTCTCCTGCTCCCAGGCACAGAGAT TATTCAGCGTCCCCTGAGAGAAGGCATGCAGACCCTGGCCCCGTAAGATCTCCTAGAGGTCCTCCACAGGAACGAGATGGCAATCTCGTCAGACGGTCAT ATTCTCCAGCAGCTTATCACAAGCCTGACGAGCTAGAGAAGGGAAATGGCTATAGCAAGAAACATGGTTTGGAGGAGGGAGACTGGAGGAGGCCGTCGTC ACCAGGAAGGAGATCGCTTTCAGGGTCTAGATCAAGGTCTCCCGACTTGTCACCTACTGCCGGCCGCCGCAGATGA
AA sequence Show only first row Show all	>Lus10002699 pacid=23180546 polypeptide=Lus10002699 locus=Lus10002699.g ID=Lus10002699.BGIv1.0 annot-version=v1.0 MRRYSPQQYSPPRRGYGGRPRSPPRSPPRRGYGGGGGGGGGGGGGGGGGGYGRRRDQNQGSLLVRNIPLDCRQEELRTLFQRFGALRDVYMPKDYHTGEP RGFAFVQFVEPYDSIEAQRRVNGQIFAGREISVVVAAESRKRPEDMRHRTRSRGGGRGGGSSYYGRSRSRSLSRSRSPRYPESRSRYRSRSYSPAPRHRD YSASPERRHADPGPVRSPRGPPQERDGNLVRRSYSPAAYHKPDELEKGNGYSKKHGLEEGDWRRPSSPGRRSLSGSRSRSPDLSPTAGRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Lus10002699 [exp]	0	1
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	2.0	0.8475
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10002905 [exp]	3.5	0.8449
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	4.6	0.8199
AT1G70150			zinc ion binding (.1)		Lus10029210 [exp]	4.6	0.7924
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10039455 [exp]	5.5	0.8033
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10029959 [exp]	6.3	0.8148
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10000540 [exp]	8.1	0.8238
AT1G65440		GTB1	global transcription factor gr...		Lus10013071 [exp]	8.5	0.8185
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	11.0	0.8267
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	11.4	0.8318

Compare expression of checked genes

Lus10002699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.