Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) AT1G76590 329 / 4e-114 PLATZ transcription factor family protein (.1) AT1G43000 235 / 2e-77 PLATZ transcription factor family protein (.1) AT4G17900 226 / 5e-74 PLATZ transcription factor family protein (.1.2) AT1G32700 221 / 4e-72 PLATZ transcription factor family protein (.1.2) AT5G46710 182 / 1e-56 PLATZ transcription factor family protein (.1) AT2G27930 157 / 2e-47 PLATZ transcription factor family protein (.1) AT2G12646 130 / 5e-36 PLATZ transcription factor family protein (.1) AT1G31040 123 / 1e-33 PLATZ transcription factor family protein (.1) AT3G60670 117 / 3e-31 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000952 [exp] 503 / 0 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10040292 [exp] 367 / 5e-129 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2) Lus10023411 [exp] 368 / 9e-128 AT1G21000 313 / 7e-107 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 218 / 2e-70 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 216 / 2e-69 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 214 / 3e-68 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2) Lus10027735 [exp] 207 / 1e-66 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10004577 [exp] 205 / 2e-65 AT4G17900 287 / 6e-99 PLATZ transcription factor family protein (.1.2) Lus10000482 [exp] 205 / 3e-65 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G259000 [exp] 381 / 8e-135 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 377 / 4e-133 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 224 / 9e-73 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 220 / 3e-71 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.003G092800 [exp] 212 / 2e-68 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 208 / 9e-67 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.016G097100 [exp] 207 / 1e-66 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.001G212400 [exp] 204 / 2e-65 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1) Potri.006G119400 [exp] 204 / 2e-65 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 201 / 2e-64 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10002700 pacid=23180556 polypeptide=Lus10002700 locus=Lus10002700.g ID=Lus10002700.BGIv1.0 annot-version=v1.0 ATGGCCACCGGCGGCAACTTGAGACGGAGCAGCTACTCCTGCCGACGTGGGAAATTCGAGGAAGTTTTTCCTCGGCATCTTTGGCCTTGTCAATCGGAGT CAACGCTCAAGACTCGAGATAGTCATCCACCTTGCAGCTCACTCATGGTGAGTCAAATTGATCGAATATCCGGTGGCCACCGGGAGCTAGGTCCGCCGTG GTTGAGGCCTTTGCTAAGAGCCAGCTACTTCGCGCCGTGTCCTTTCCATGGTGATTCCAATAAGAGCGAATGCAATCTATTCTGTTTGGATTGCACTGGG AATGCTTTCTGTTCTTACTGTTTGATCAATCACCGAGATCACCGTGTTGTTCAGATTCGGCGATCTTCGTATCACAACGTGGTGAGAGTGAATGAAATAC AGAAGTACATAGACATATCTTGCGTCCAGACTTACATCATCAACAGTGCAAAGATAGTTTTCCTGAATGAGAGGCCTCAACCAAGGCCGGGAAAAGGTGT CACCAATACTTGTGAGATATGTTGCAGGAGCCTCCTCGATTCGTTCCGATTCTGTTCTCTTGGCTGCAAGATGGGGGCTATGAAAAGGGGAGACCAGTCC TTATCATTCACACTGAAGGAGAAGCACAGCAGAGATCAGTTCCTGGAGGATGATGGTGGAGTATCTGATTCGGATGAATGTTCGACGCCAAAGAAGATTA GAAGGACAAACTTTTTTAACCGTTTGATGGACCGGCTGTCAATCCATTCCCCTGAAGCTCATCGTAATCCCTTCAATGAAGGAAGGGAGAGCTCCGGTGA TGACGACAGCATTTCCCCATCGACTCCTCCGATATTCAATCATCGAAATGCCAGGAGGCGCAAGGGTATACCTCATCGTGCCCCATTCTGA
AA sequence Show only first row Show all	>Lus10002700 pacid=23180556 polypeptide=Lus10002700 locus=Lus10002700.g ID=Lus10002700.BGIv1.0 annot-version=v1.0 MATGGNLRRSSYSCRRGKFEEVFPRHLWPCQSESTLKTRDSHPPCSSLMVSQIDRISGGHRELGPPWLRPLLRASYFAPCPFHGDSNKSECNLFCLDCTG NAFCSYCLINHRDHRVVQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSAKIVFLNERPQPRPGKGVTNTCEICCRSLLDSFRFCSLGCKMGAMKRGDQS LSFTLKEKHSRDQFLEDDGGVSDSDECSTPKKIRRTNFFNRLMDRLSIHSPEAHRNPFNEGRESSGDDDSISPSTPPIFNHRNARRRKGIPHRAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	0	1
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006463 [exp]	1.4	0.9731
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10024030 [exp]	1.4	0.9719
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	3.5	0.9713
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	3.7	0.9689
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10000733 [exp]	4.2	0.9700
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	4.2	0.9714
AT5G36930			Disease resistance protein (TI...		Lus10007825 [exp]	4.2	0.9627
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10032024 [exp]	4.7	0.9657
AT1G44770			unknown protein		Lus10034500 [exp]	5.2	0.9677
AT3G22260			Cysteine proteinases superfami...		Lus10003816 [exp]	5.5	0.9594

Compare expression of checked genes

Lus10002700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.