Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48670 668 / 0 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G12550 591 / 0 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT1G15910 447 / 6e-150 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 434 / 1e-144 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G80790 415 / 4e-137 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT1G13790 400 / 2e-130 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT5G59390 375 / 1e-122 XH/XS domain-containing protein (.1) AT4G01180 367 / 1e-119 XH/XS domain-containing protein (.1) AT4G01780 336 / 1e-108 XH/XS domain-containing protein (.1) AT3G29375 147 / 6e-39 XH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000951 [exp] 1259 / 0 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002703 [exp] 667 / 0 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10037986 [exp] 513 / 2e-175 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 490 / 1e-166 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10000949 [exp] 444 / 1e-148 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10026076 [exp] 432 / 9e-144 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10000950 [exp] 308 / 5e-98 AT3G12550 159 / 3e-42 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10032933 [exp] 293 / 1e-92 AT1G13790 261 / 9e-80 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Lus10000948 [exp] 244 / 5e-77 AT3G12550 193 / 2e-58 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202700 [exp] 844 / 0 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 527 / 3e-180 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.003G181000 [exp] 480 / 1e-162 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Potri.001G240666 [exp] 263 / 5e-81 AT1G13790 228 / 3e-67 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.010G087400 [exp] 58 / 2e-08 AT3G22430 418 / 3e-142 unknown protein Potri.008G152900 [exp] 55 / 1e-07 AT3G22430 409 / 2e-138 unknown protein Potri.001G240670 [exp] 42 / 6e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03470 [flax] [poplar] zf-XS XS zinc finger domain PF03469 [flax] [poplar] XH XH domain CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10002702 pacid=23180552 polypeptide=Lus10002702 locus=Lus10002702.g ID=Lus10002702.BGIv1.0 annot-version=v1.0 ATGGAGAGCGACTCTGGTAGCGGTACAGATATAAGCGACACGGAAATGGACGAGTACAAAGACCAACGTTATGAAGAACTGAAGGAAGGGAAGCATGAGG TGAAGAATCATGATGAAACGTTTGCTTGCCCATATTGTCCAAAGAAGAGAAAGCAAGGCTATCTATATAGCGAACTGCTCCAACATGCTTCTGGGGTAGG CAGGAGTTCTGGTAAGCGAACCTGCAAGGAGAGAGCAAATCACCTGGCTTTAGCTCAGTTTCTGGAAAAAGATGTAGCAGGTCCATCATCCAAACCTGTT CAGAATGATTCTGATCCTCCCAATGGTTGCAACCGGGATGAGGCATTTGTGTGGCCTTGGATAGGAATTGTGGTTAATATTCCTACCAGCAAGGCACCAA ATGGGAAATGCGTAGGAGCTAGTGGATCCAAGTTTAGGGATGAACTAATTGGCAGAGGGTTTAATCCAACTAGAGTTCGTCCTCTGTGGAATTATCATGG CCATTCGGGAATGGCCATTGTAGAGTTCAACAGAGACTGGCCTGGTTTACACAATGCTCTTTCATTTGAAAAGGCTTATCAGGCAGATAATCATGGAAAG AAGGATTTTCTTGCCAATAACGAGATCAAGACTGGTGTCTTTTGTTGGGTTGCACGTGCTGATGACTATCATGCTACCAACATCGTTGGAGAAAATTTGA GGAAGATTGGAGATCTTAAGACAATTTCTGATATCATTGATGAAGAAAAGAGGAAGCAGGATAGTCTGGTGTCCAATCTAGAAAATCTTATTGAGATAAG AAATAAACAGATAGAGGAGATGGCTGTGAGATGTAGTGAGGCCTCGGCTTCCCTCCAGAACGTGATGGCTGAGAAAGAGAAGCTTCTTGTGGCTTACGTT GAAGACATAAAGAAAATCCAAGCTAGTGCACATGATCACTTCCAGAGAATATCTAATGACCATGAAAAGCTGAAGTCACAAGTGGAATCTCAGAAGAAGG AGCTTGAGATGCGCAAGTCTCAATTGGAAGAGCGAGAAGCTAAAAATGAAATTGGCAGGAGAGCTCTTCTGGAAGAGATTGAAAAGAATGCAAGTAGAAA TAGTTCACTTGAGTTAGCATCCATCGAGCAACAAAGGGCAGATGAGGATGTAATGAAATTGGCCGAGGATCAGCAGAGGGAAAAAGAAAAGCTTCACAAC AGGATCATTCAACTGGAGAAGCAGTTGGATGCGAAGCAAAAACTAGAGTTGGAAATAGAGCAGCTCAAAGGCAGATTGAAAGTGATGCAGCACATGGGAG ATGATGGAGATGCAGAAATTTTGAAGAAAGTGGAAGCTGTTATGAAAGATTTGAAAGAGAAGGAGGATGAACTTGATGGTGTTGAAGCACTGAACCAAAC TCTCATTGTCAAGGAGCGCAAGAGCAATGACGAGTTGCAGGATGCCCGTAAGGAATTGCTTAACTGCTTAAAAGATATATCAAGCCATGGTGGTCATATA CGTGTTAAGCGAATGGGTGAACTTGACGGTGAGCCATTCCTTAAAGCGATGAGCAAGATTTATTCAGAGGAAGAAGCGGAAGATAAGGCGTCGGAACTAT GTTCACTGTGGGTAGAGTATCTCAAAGATCCAGATTGGCATCCTTTCAAAGTTGTTGAGGTGGAAGGTGGGAAGCATCAGTATGTGCTTAACGAGGAAGA TGAAAGATTGAATGGTCTGAGAAAGGAAGTTGGGCAGGAAGCTTATGATGCAGTGAGATCAGCTTGGATGGAGATTAACGAATACAACCCGAGCGGAAGA TATATAATCTCTGAAGTGTGGAACTACAAGGATGGGAGAAAGGCAACGCTGAAGGAAGGAGTGACATTCTTATTGGATGTATTGGAGCGACGGAAGAAGG TGTTTGGCTTGAGTTAA
AA sequence Show only first row Show all	>Lus10002702 pacid=23180552 polypeptide=Lus10002702 locus=Lus10002702.g ID=Lus10002702.BGIv1.0 annot-version=v1.0 MESDSGSGTDISDTEMDEYKDQRYEELKEGKHEVKNHDETFACPYCPKKRKQGYLYSELLQHASGVGRSSGKRTCKERANHLALAQFLEKDVAGPSSKPV QNDSDPPNGCNRDEAFVWPWIGIVVNIPTSKAPNGKCVGASGSKFRDELIGRGFNPTRVRPLWNYHGHSGMAIVEFNRDWPGLHNALSFEKAYQADNHGK KDFLANNEIKTGVFCWVARADDYHATNIVGENLRKIGDLKTISDIIDEEKRKQDSLVSNLENLIEIRNKQIEEMAVRCSEASASLQNVMAEKEKLLVAYV EDIKKIQASAHDHFQRISNDHEKLKSQVESQKKELEMRKSQLEEREAKNEIGRRALLEEIEKNASRNSSLELASIEQQRADEDVMKLAEDQQREKEKLHN RIIQLEKQLDAKQKLELEIEQLKGRLKVMQHMGDDGDAEILKKVEAVMKDLKEKEDELDGVEALNQTLIVKERKSNDELQDARKELLNCLKDISSHGGHI RVKRMGELDGEPFLKAMSKIYSEEEAEDKASELCSLWVEYLKDPDWHPFKVVEVEGGKHQYVLNEEDERLNGLRKEVGQEAYDAVRSAWMEINEYNPSGR YIISEVWNYKDGRKATLKEGVTFLLDVLERRKKVFGLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002702 [exp]	0	1
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	3.2	0.8371
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	3.3	0.8459
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10018060 [exp]	3.9	0.7782
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	7.7	0.8228
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	8.9	0.8207
AT5G17850			Sodium/calcium exchanger famil...		Lus10001329 [exp]	9.3	0.7121
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10011165 [exp]	10.0	0.8149
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	14.0	0.8017
AT3G15120			P-loop containing nucleoside t...		Lus10017935 [exp]	14.9	0.7760
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	16.9	0.7659

Compare expression of checked genes

Lus10002702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.