Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48670 475 / 2e-158 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G12550 448 / 4e-148 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT1G13790 350 / 3e-109 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT4G00380 319 / 9e-99 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G15910 313 / 1e-96 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT5G59390 295 / 3e-90 XH/XS domain-containing protein (.1) AT1G80790 287 / 8e-87 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT4G01180 270 / 3e-81 XH/XS domain-containing protein (.1) AT4G01780 251 / 3e-75 XH/XS domain-containing protein (.1) AT3G29375 118 / 1e-28 XH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000949 [exp] 1098 / 0 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000950 [exp] 683 / 0 AT3G12550 159 / 3e-42 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 655 / 0 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002702 [exp] 651 / 0 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10037986 [exp] 384 / 2e-123 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 369 / 1e-117 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10000948 [exp] 342 / 2e-113 AT3G12550 193 / 2e-58 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10026076 [exp] 315 / 5e-97 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10032933 [exp] 217 / 1e-62 AT1G13790 261 / 9e-80 factor of DNA methylation 4, XH/XS domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202700 [exp] 676 / 0 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 421 / 4e-137 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.003G181000 [exp] 335 / 8e-105 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Potri.001G240666 [exp] 187 / 6e-52 AT1G13790 228 / 3e-67 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.010G087400 [exp] 44 / 0.0005 AT3G22430 418 / 3e-142 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03470 [flax] [poplar] zf-XS XS zinc finger domain PF03469 [flax] [poplar] XH XH domain CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10002703 pacid=23180560 polypeptide=Lus10002703 locus=Lus10002703.g ID=Lus10002703.BGIv1.0 annot-version=v1.0 ATGGAGGACGATTCCCAGATCGGCACAGATATAAGTGAGTCAGAAAGGGATGAATATGAAGATCAATGTTATGAAGAATTGAAGAGTGGGAAATACAGTG TACGAAATCCTGATGGCACCTTTGCTTGTCCATATTGTCCCAAGGACAGAAAGCAAGACTATCCTTACCTTGCGATTTTCGAGCATGCTTATGGGGTTCG CGATAGTAAGTCAGCGAGAAGGACCTGCAGGGAGAAAGCAATTCACGGGGCATTGGCTAGGTACTTGGAGGCAACTGTTGGTGCTCCACCACACAAGCCA AATCTTCAAAAACAACCTCTAAAGAAAGCATCGGATCAAAGTAGTAAGAAAGCAACGGATCCAAGTAGTCGCTTGTTTGCTTGCCCGTTTTGTCCCAATA GGAAGAAAGATTACCTTTACCATGAGATCCTCCAACATGCTCTCGGTGTCGGATACAGTGCTTCTGCTAAAAGAACAAGTGATGACAAACAAATGCACCT GTCTTTGGCAAGATATTTGGAAAGGATTGCATCAGGACCATCGTTGAAACCGAAAGTTAAAAATGATGCTTCGGAGAAAACGGATGTGCAAAATAGTTCT CTATGTTCTTTTGCTTGCCCACATTGTTCCAAGAAAAGAAAGCAAGACGACGTTTACAATGTAATCCTTCAGCATACCTCTGGAATGGGCAAGAGTAATT TGGCCAAAAGAAATTGCAAGGAAAATCCTAATCACTTCGATTCTGATAAGGACTTGGGAAAGAATACAGCAGGTCCATCAGGAAGGCTAAAAGAACAAGA AGATACTGTAAGTGGTTCGATCAATGAAGAGGTATTTGTCTGGCCTTGGACCGGAGTCGTGGTTAATATTCCCAACACTGAGACAGCAGATGGATCCAAG TTCGAGGATGAACTTGTGAGTAGGGGCTTCAATCCCCTTGGAGTTCAACCACTGCGAGATTATGAAGGCCATTCAGGAACTGCGATTGTAGAATTTGATG GAGATTGGCCTGGTTTGTACAATGCTCTTTCATTTGAAAAAGCTTATGAGGCTGATAACCGTGGCAAGAATGAATGGCTTGGAAAAAGCGAGAACCCAGC AGGCATTTATTGTTGGTTTGCTCGTCCGGATGACTACCATGCTACCAACATCATCGGAGAACACCTGAGAAGAACGACAGATCTTAAAACGATTTCTGAG GTCATGGATGTTGAGAACAAGGCGAGTAATGAATTTGTCTCCAGTCTTTCGAACTCCCTTATAATGAAAAAACAGCAGGTGGAGGAGATGGATCAGAGAT GCAAGGCGACCTCAACCTTTCTCAAGAACTTGATGGAAGAGAAAGAAACCCATCTTCAGGCTTATAAGGAAGAGCTACGAAAAATCCAAGCAAGTGCCAA CGATCACTTCCAGAGAATATTTAATGATCATGAAAAGCTTAAGTCACAGGTGGATGCTCAGAAAAAGGAGCTTGAAATGCGCAGGGTACAATTGGAAAAG AGAGAAACCAAAATTGAAGCAGACAGAAGAATGCTCTTGCAAGATATTGAAAAGTCAGCTGCCTTAGGGGAGCAGAGAACAAATGAGGACCTATTGAAAT TAGCTGAAGATCTTAAGAGGGAGAAAGAAAAACTTGACCGTCGAATCATTCTATTGGAAAAGCAAGTAGATGCAAACCCAAATATGGAGTCAGAAGTAGA GCAACTCCGAAGTGCATTGGATGTGATGAAATGCAACGCAGGTAGTGGTGACTCTGAAGTTTTGGAGAATATGGAAGTCATAATGAAATGGTCGAAAGAA AAGGACTACGAACTTGACAGCTTAGAAACACTGAACCACAGTCTCATCGTTAGGGAGCGCGAGAGCAATGATCAGTTGCAAGATGCCCGTAAGGAGTTGG CTGATTTTTTGAAAGAAATGCCAAGCCCCAGTAATATACATGTTAAGCGTATGGGGGAGCTGAATCAAAAGCCATTCCTGAAAGTAATGATGAAAAAGTA CAACATGGAAGATGCCGAAGTCAAGGCTTCAGAACTTTGCTCACTATGGGTAGAATATCTGAAAGATCCAGATTGGCATCCTTTTAAAGTTGTTATGGCC GATGGCAAGCATAAGGAAGTAATTGATGATAAAGACGAAAGATTAAAAGAACTGAAAGATGAGGTTGGTGAGGAAGCGTATGAAGCAGTGGCATCAGCTC TGACTGAGATCAATAATTATAACCCCAGTGGAAGATACATTGTCTCTGAGCTGTGGAACAAGAAAGAATCTAGAAAGGCCTCCTTGCAGGAAGGAGTCGC TTCCTTGTTGGATTTACTGGAGCAAGTGAAGGGATCACTTTGA
AA sequence Show only first row Show all	>Lus10002703 pacid=23180560 polypeptide=Lus10002703 locus=Lus10002703.g ID=Lus10002703.BGIv1.0 annot-version=v1.0 MEDDSQIGTDISESERDEYEDQCYEELKSGKYSVRNPDGTFACPYCPKDRKQDYPYLAIFEHAYGVRDSKSARRTCREKAIHGALARYLEATVGAPPHKP NLQKQPLKKASDQSSKKATDPSSRLFACPFCPNRKKDYLYHEILQHALGVGYSASAKRTSDDKQMHLSLARYLERIASGPSLKPKVKNDASEKTDVQNSS LCSFACPHCSKKRKQDDVYNVILQHTSGMGKSNLAKRNCKENPNHFDSDKDLGKNTAGPSGRLKEQEDTVSGSINEEVFVWPWTGVVVNIPNTETADGSK FEDELVSRGFNPLGVQPLRDYEGHSGTAIVEFDGDWPGLYNALSFEKAYEADNRGKNEWLGKSENPAGIYCWFARPDDYHATNIIGEHLRRTTDLKTISE VMDVENKASNEFVSSLSNSLIMKKQQVEEMDQRCKATSTFLKNLMEEKETHLQAYKEELRKIQASANDHFQRIFNDHEKLKSQVDAQKKELEMRRVQLEK RETKIEADRRMLLQDIEKSAALGEQRTNEDLLKLAEDLKREKEKLDRRIILLEKQVDANPNMESEVEQLRSALDVMKCNAGSGDSEVLENMEVIMKWSKE KDYELDSLETLNHSLIVRERESNDQLQDARKELADFLKEMPSPSNIHVKRMGELNQKPFLKVMMKKYNMEDAEVKASELCSLWVEYLKDPDWHPFKVVMA DGKHKEVIDDKDERLKELKDEVGEEAYEAVASALTEINNYNPSGRYIVSELWNKKESRKASLQEGVASLLDLLEQVKGSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002703 [exp]	0	1
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	1.4	0.9562
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009398 [exp]	10.6	0.9019
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	10.8	0.9218
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	13.0	0.9125
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	13.0	0.9182
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10003964 [exp]	13.1	0.8804
AT1G18680			HNH endonuclease domain-contai...		Lus10003480 [exp]	14.5	0.8982
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	14.6	0.9162
AT5G62680			Major facilitator superfamily ...		Lus10033106 [exp]	17.3	0.8976
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	18.0	0.9137

Compare expression of checked genes

Lus10002703 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.