Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13820 410 / 2e-134 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT3G12560 384 / 1e-124 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT1G07540 300 / 1e-92 MYB TRFL2 TRF-like 2 (.1) AT3G46590 263 / 2e-79 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT5G59430 241 / 9e-71 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G53790 186 / 1e-52 MYB TRFL4 TRF-like 4 (.1) AT2G37025 45 / 0.0001 TRFL8 TRF-like 8 (.1.2) AT1G72650 44 / 0.0005 MYB TRFL6 TRF-like 6 (.1.2) AT1G17460 43 / 0.0008 MYB TRFL3 TRF-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000947 [exp] 1167 / 0 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040285 [exp] 774 / 0 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10023406 [exp] 705 / 0 AT5G13820 392 / 5e-128 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10016527 [exp] 283 / 1e-85 AT3G46590 388 / 1e-127 TRF-like 1 (.1.2.3) Lus10040795 [exp] 276 / 2e-83 AT1G07540 400 / 1e-132 TRF-like 2 (.1) Lus10024385 [exp] 243 / 6e-71 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10010844 [exp] 239 / 2e-69 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10013809 [exp] 44 / 5e-05 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10026522 [exp] 44 / 0.0003 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202400 [exp] 677 / 0 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.008G057300 [exp] 668 / 0 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.001G241600 [exp] 432 / 6e-142 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.009G032000 [exp] 431 / 9e-142 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.006G086500 [exp] 289 / 6e-88 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.003G063700 [exp] 47 / 4e-05 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.006G126300 [exp] 44 / 0.0003 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.001G170200 [exp] 44 / 0.0005 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002704 pacid=23180555 polypeptide=Lus10002704 locus=Lus10002704.g ID=Lus10002704.BGIv1.0 annot-version=v1.0 ATGGTGTTGAAGAAGAAGCAGCAATATCATGGTTTCAACGGTTTCTACTTTCCTTCTGTTCCCAAGGCACCCAGATCTGCTAGAAGGAGTTTCCATAAGA GGATAGTCGAGGATAATCAAATATGCGCATTTGAGTTACTTGCTTCTTTAGCGGGAAAGCTATTGCAAGAAAGTGAAAGCTCATCTGCGTCTAGTAATGC ATCCGATGCAAATGACCGGCCTGCAATTTGTGATGACATTGTTAAACGAGAACAAGTTGAGAAAAGGCCTGTCAAGGGAGAGTGCTTTGATCTGGGAAGC TGTGAAGAGAGCACTTACCTTCCTGATTTTGGTTCACCAAACAATGACTGTAAGGGAATTATAAAGGAAATTCCACCACCAGCTGAGAGTGAGCGCTCTT CAATAGTCTCAAATTCTGACTCCTCAGAGAAAGTCAGCAGTGAAGTGAAGCCCATTCAATGTGAGAAGTTACCTGCTAAAGTCGAGCTAGTCTCTCCCGT CTCCATGGAGCTTTCTAATGCAACTCCAGAAAATGGGTTCAGAAGACAGCCACTGGCTGATGCGCTGGATACTAGAGAGGTGATCCTTGATAATACGTGC AGTTCAAAGGATCTCATGGATTCATGTAGGAAGAATCCGGCTTTGATCGAGTTTGATAACACTGTCAACTTACTGTCAGGCAGGAATTCTCTCCTTAATG CTTCTGATTTGAAGCATGGGGATAAGGTTAGATTAGGTATTAGAGATGATGATGAAAAATTATTTAGGTTTTGTAAACAAAGCAACAAGAAAAAGTCGTT CAGGCCTTCTTCAAGAATTGGCGACAGAAGAATAAGAAAGTTCCTGTCATCCAAATACTGGAAAGCAGCTCCTAGATTGAAAGACTATGAACTAACCAAA CCTGCATTTGAAAATGCGGGAATGAAGCCTCTTTATCACAAGAGGAAGTCATCTAGCCCTCGTGAAAAGCATCAGAGTGACATTCTTTACAAAAGGAGGA AGTTTTCTGACCATAACTTAGTTATAGCTTCTGATGGGGTTTTTAGCAGTGAAAGTGTCTGTAATTCACCTGAAAAAGGCAAGTCCGGAGACATCTCAGC AGTCCTGCTTCATGGAGAAAATGGCTTGTCATCTCCAGCTATTGGTCATCAAGCTCAGCTCAACTCGAAGGATTCTCATGTTAAAGTGAACATCAAGTCA TTCAAAATTCCAGAGCTTTTGATTGAGGTCCCAGAAACTGCCACTGTTGGTTCTTTGAAGAGAACTGTTATGGAGGCTGTGACTGCTATACTTTCTGGTG GTTTACATGTCGGGGTGCTTGTTCATGGAAAGAAGGTTAGAGATGATACCAGAACACTGTTGCAGACTGGCATCACTTCTTCAGAAAATCTTGATACTCT GGGTTTTACATTGGAGCCCAGTTTAGTGCAAGCTTCAGCACCTTTGTGCCCTGAAGGGCGTCCAGCTATCTTACCATGTCATACTTCCCAGCTTATATCA AGGTCCCCGGCTACTAGAGCTGTAGAGTTAGAGAGTAACGACCCCCCAACTCATCCACCTTCACCAAAAAATCAGGTTGACAATGATGAGACTAACGAGG AACCAATTTCTGCTAATTCGGACATTGTAGCTGACAAAGCACTGGCAGATTCCCGAGCTCTGGTTGCAGTTGAGCCAATAACTACTGAGCCTCTTAACGT TGTTCCCCTCAACCAGAAATGTAGAAGATCTGAAAATGTACAGCGTCGAACTAGGAGACCATTCTCAGTCTCAGAAGTAGAGGCACTTGTACAGGCAGTT GAAGAACTGGGCACTGGAAGGTGGCGTGATGTTAAGTTACGATCCTTTGACAATGCTGACCATCGAACATATGTAGACTTGAAGGATAAATGGAAGACAC TAGTCCACACAGCTAAGATTGCTCCACAGCAAAGAAGAGGGGAGCCAGTTCCTCAGAATCTTCTGGACAGAGTGTTGGCAGCTCACGGCTACTGGTCAGA GAATCAAGCGAAGCAACAGTGCAAAAATGAAGCTACCTCAACTTGTACCGTCATGCAGATTTCAGAAGGGCAGGCGGTTTAG
AA sequence Show only first row Show all	>Lus10002704 pacid=23180555 polypeptide=Lus10002704 locus=Lus10002704.g ID=Lus10002704.BGIv1.0 annot-version=v1.0 MVLKKKQQYHGFNGFYFPSVPKAPRSARRSFHKRIVEDNQICAFELLASLAGKLLQESESSSASSNASDANDRPAICDDIVKREQVEKRPVKGECFDLGS CEESTYLPDFGSPNNDCKGIIKEIPPPAESERSSIVSNSDSSEKVSSEVKPIQCEKLPAKVELVSPVSMELSNATPENGFRRQPLADALDTREVILDNTC SSKDLMDSCRKNPALIEFDNTVNLLSGRNSLLNASDLKHGDKVRLGIRDDDEKLFRFCKQSNKKKSFRPSSRIGDRRIRKFLSSKYWKAAPRLKDYELTK PAFENAGMKPLYHKRKSSSPREKHQSDILYKRRKFSDHNLVIASDGVFSSESVCNSPEKGKSGDISAVLLHGENGLSSPAIGHQAQLNSKDSHVKVNIKS FKIPELLIEVPETATVGSLKRTVMEAVTAILSGGLHVGVLVHGKKVRDDTRTLLQTGITSSENLDTLGFTLEPSLVQASAPLCPEGRPAILPCHTSQLIS RSPATRAVELESNDPPTHPPSPKNQVDNDETNEEPISANSDIVADKALADSRALVAVEPITTEPLNVVPLNQKCRRSENVQRRTRRPFSVSEVEALVQAV EELGTGRWRDVKLRSFDNADHRTYVDLKDKWKTLVHTAKIAPQQRRGEPVPQNLLDRVLAAHGYWSENQAKQQCKNEATSTCTVMQISEGQAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10002704 [exp]	0	1
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	6.7	0.8765
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10007957 [exp]	9.6	0.8388
AT5G49960			unknown protein		Lus10035805 [exp]	19.4	0.8741
AT5G05390		LAC12	laccase 12 (.1)		Lus10042252 [exp]	21.3	0.8672
AT2G37840			Protein kinase superfamily pro...		Lus10022593 [exp]	21.4	0.8574
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	23.6	0.8749
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10036116 [exp]	25.0	0.8672
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	25.3	0.8140
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10024522 [exp]	30.7	0.8197
AT1G29760			Putative adipose-regulatory pr...		Lus10034735 [exp]	32.0	0.8625

Compare expression of checked genes

Lus10002704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.