Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39705 76 / 1e-19 RTFL8, DVL11 DEVIL 11, ROTUNDIFOLIA like 8 (.1) AT3G55515 66 / 1e-15 DVL8, RTFL7 DEVIL 8, ROTUNDIFOLIA like 7 (.1) AT3G14362 54 / 2e-11 DVL19, RTFL10 DEVIL 19, ROTUNDIFOLIA like 10 (.1) AT1G53708 54 / 8e-11 RTFL9 ROTUNDIFOLIA like 9 (.1) AT2G29125 54 / 1e-10 RTFL2, DVL13 DEVIL 13, ROTUNDIFOLIA like 2 (.1) AT2G36985 52 / 2e-10 DVL16, ROT4 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) AT5G59510 53 / 5e-10 RTFL5, DVL18 DEVIL 18, ROTUNDIFOLIA like 5 (.1) AT4G13395 50 / 1e-09 DVL10, RTFL12 DEVIL 10, ROTUNDIFOLIA like 12 (.1) AT1G07490 50 / 3e-09 RTFL3, DVL9 DEVIL 9, ROTUNDIFOLIA like 3 (.1) AT4G35783 49 / 3e-09 RTFL6, DVL17 DEVIL 17, ROTUNDIFOLIA like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023399 [exp] 95 / 9e-27 AT2G39705 91 / 3e-25 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Lus10021966 [exp] 57 / 3e-12 AT1G53708 73 / 8e-19 ROTUNDIFOLIA like 9 (.1) Lus10041259 [exp] 56 / 4e-12 AT1G53708 70 / 2e-17 ROTUNDIFOLIA like 9 (.1) Lus10040784 [exp] 56 / 2e-11 AT5G59510 84 / 1e-21 DEVIL 18, ROTUNDIFOLIA like 5 (.1) Lus10028393 [exp] 49 / 4e-09 AT4G35783 60 / 5e-14 DEVIL 17, ROTUNDIFOLIA like 6 (.1) Lus10026526 [exp] 49 / 6e-09 AT2G36985 63 / 2e-15 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Lus10034272 [exp] 48 / 8e-09 AT1G13245 72 / 5e-19 DEVIL 4, ROTUNDIFOLIA like 17 (.1) Lus10041846 [exp] 48 / 1e-08 AT4G35783 59 / 1e-13 DEVIL 17, ROTUNDIFOLIA like 6 (.1) Lus10001569 [exp] 48 / 2e-08 AT5G59510 79 / 8e-20 DEVIL 18, ROTUNDIFOLIA like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G057800 [exp] 113 / 1e-34 AT2G39705 84 / 8e-23 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.010G201700 [exp] 113 / 1e-34 AT2G39705 72 / 2e-18 DEVIL 11, ROTUNDIFOLIA like 8 (.1) Potri.008G035900 [exp] 64 / 5e-15 AT2G36985 66 / 1e-16 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.010G226250 [exp] 62 / 1e-14 AT2G36985 67 / 3e-17 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.001G242800 [exp] 61 / 2e-13 AT2G29125 71 / 4e-17 DEVIL 13, ROTUNDIFOLIA like 2 (.1) Potri.001G161200 [exp] 59 / 4e-13 AT1G53708 76 / 1e-19 ROTUNDIFOLIA like 9 (.1) Potri.002G235101 [exp] 57 / 1e-12 AT1G53708 75 / 1e-19 ROTUNDIFOLIA like 9 (.1) Potri.003G073900 [exp] 56 / 5e-12 AT1G53708 81 / 9e-22 ROTUNDIFOLIA like 9 (.1) Potri.006G125600 [exp] 53 / 8e-11 AT2G36985 75 / 3e-20 ROTUNDIFOLIA4, DEVIL 16, DVL family protein (.1) Potri.009G034300 [exp] 50 / 2e-09 AT2G29125 64 / 9e-15 DEVIL 13, ROTUNDIFOLIA like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08137 [flax] [poplar] DVL DVL family
Representative CDS sequence Show only first row Show all	>Lus10002705 pacid=23180561 polypeptide=Lus10002705 locus=Lus10002705.g ID=Lus10002705.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCCTGCACGCTCACTCACTCTGCCAGCGCTCCGTCGCAGTTCTATTTCGACGAGAAGTGGAAGCTGTCCAAGAAGGAGTCCTCCTCCTCCA GGAGCTGCCGCTCGTCAACCGCTACGCCGACGCCGACGATGAAGAATTCGTCACATAGGAGGTGTTCCTTTACCAGGAAATGTGCGAGTCTGGTTAAGGA ACAGCGATCCAGGTTCTATATCATGCGGAGGTGCGTCACCATGCTCATCTGTTGGCGCGATTACACCGATTCTTAA
AA sequence Show only first row Show all	>Lus10002705 pacid=23180561 polypeptide=Lus10002705 locus=Lus10002705.g ID=Lus10002705.BGIv1.0 annot-version=v1.0 MAAACTLTHSASAPSQFYFDEKWKLSKKESSSSRSCRSSTATPTPTMKNSSHRRCSFTRKCASLVKEQRSRFYIMRRCVTMLICWRDYTDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10002705 [exp]	0	1
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	1.7	0.8578
AT5G23340			RNI-like superfamily protein (...		Lus10040998 [exp]	1.7	0.8428
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	3.7	0.8466
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10013493 [exp]	4.5	0.8342
					Lus10017454 [exp]	7.3	0.8234
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	9.9	0.7966
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10024448 [exp]	10.2	0.7865
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	11.2	0.8237
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	15.6	0.7959
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	16.0	0.7606

Compare expression of checked genes

Lus10002705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.