Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55530 328 / 1e-113 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT1G04790 72 / 4e-14 RING/U-box superfamily protein (.1) AT3G58720 67 / 8e-13 RING/U-box superfamily protein (.1.2) AT1G35625 64 / 3e-12 RING/U-box superfamily protein (.1) AT1G55530 65 / 7e-12 RING/U-box superfamily protein (.1) AT5G66070 62 / 2e-11 RING/U-box superfamily protein (.1.2) AT1G35630 63 / 3e-11 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G28890 63 / 3e-11 RING/U-box superfamily protein (.1) AT4G26400 63 / 3e-11 RING/U-box superfamily protein (.1.2) AT1G71980 63 / 5e-11 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000513 [exp] 436 / 4e-156 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10004977 [exp] 297 / 2e-101 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10001568 [exp] 293 / 9e-100 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10023671 [exp] 69 / 4e-13 AT1G04790 232 / 7e-67 RING/U-box superfamily protein (.1) Lus10006074 [exp] 66 / 4e-12 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10009438 [exp] 66 / 7e-12 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10016936 [exp] 65 / 1e-11 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10029582 [exp] 64 / 2e-11 AT3G61180 315 / 3e-106 RING/U-box superfamily protein (.1) Lus10014823 [exp] 64 / 3e-11 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201500 [exp] 332 / 3e-115 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.009G034700 [exp] 318 / 2e-109 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.003G176500 [exp] 71 / 1e-13 AT1G04790 264 / 2e-78 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 68 / 1e-12 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 64 / 5e-12 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 62 / 5e-12 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.006G247000 [exp] 65 / 7e-12 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 64 / 1e-11 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 63 / 1e-11 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.015G047900 [exp] 64 / 2e-11 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10002706 pacid=23180547 polypeptide=Lus10002706 locus=Lus10002706.g ID=Lus10002706.BGIv1.0 annot-version=v1.0 ATGAGTTTTGTTTTCCGAGGGAATAGAGCTGAATTAGATTTAGAAAATGGCTTTCCTGGATTCGTCCCTGAGCGCCGAGCAATGCGAGTTCATCCGACTC GGCCGGTTAATTCCAACTCACTTCTATTCCTCGTCACAGTTATATTGTTGTTCATGATATTGAACTCGCACCAAATGCCTCCTAATTTTCTGCTTTGGCT GGTGCTTGGGGTATTTCTAATGGCCACAATCCTAAGAATGTATGCAACTTGTCAACAATTGCAAGCTCAAGCGCAAGCTCATGCTGCCATAACCAGTGGG CTTCTTGGCCATACCGAATTAAGGCTGCATATGCCGCCTTCCATAGCACTTGCAACCAGAGGGCGTTTGCAGGGGCTCAGACTCCAGCTTGCTCTTCTTG ATAGAGAATTTGACGACCTGGATTATGAAACTTTGAGAGCACTGGATTCTGATGTTGTTCCCACTACATCAATGAGCGAGGAAGAGATAAATGCTCTTCC TGTTCACAATTATAAGGTGTCGGGTTCTCAAAGTTCGGTCACCTCAGTTTCAGTACAGCAAACATCATCTTCCATTCAAGCAGGGCCAAAGAAGGAGACA TGTTGTGAGGTCGGAGACTTGAAGGTGACAGAAGAAGAACTAACTTGCAGCGTCTGCTTGGAACAAGTTGACGTAGGAGAAGTGATACGTACCCTCCCAT GCTTGCATCAGTTCCATGCGATTTGTATAGATCCATGGTTGAGGCAACAGGGAACATGCCCAGTTTGCAAATACAGGGCAGGATCCAGCTGGCCTGAAAA TGGACAAGGTGCCGTTGCTTCTTACATGGTTTAA
AA sequence Show only first row Show all	>Lus10002706 pacid=23180547 polypeptide=Lus10002706 locus=Lus10002706.g ID=Lus10002706.BGIv1.0 annot-version=v1.0 MSFVFRGNRAELDLENGFPGFVPERRAMRVHPTRPVNSNSLLFLVTVILLFMILNSHQMPPNFLLWLVLGVFLMATILRMYATCQQLQAQAQAHAAITSG LLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDVVPTTSMSEEEINALPVHNYKVSGSQSSVTSVSVQQTSSSIQAGPKKET CCEVGDLKVTEEELTCSVCLEQVDVGEVIRTLPCLHQFHAICIDPWLRQQGTCPVCKYRAGSSWPENGQGAVASYMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	0	1
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	1.4	0.9630
AT2G30105			unknown protein		Lus10031861 [exp]	1.4	0.9604
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	2.0	0.9512
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10035230 [exp]	2.4	0.9525
AT5G01010			unknown protein		Lus10042743 [exp]	5.7	0.9264
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	5.7	0.9401
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	7.0	0.9460
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	7.1	0.9357
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10021948 [exp]	7.7	0.9404
					Lus10034398 [exp]	8.9	0.9435

Compare expression of checked genes

Lus10002706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.