Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39710 563 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G02190 471 / 1e-164 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT1G66180 243 / 6e-76 Eukaryotic aspartyl protease family protein (.1) AT5G37540 235 / 9e-73 Eukaryotic aspartyl protease family protein (.1) AT2G03200 135 / 7e-35 Eukaryotic aspartyl protease family protein (.1) AT1G01300 129 / 1e-32 Eukaryotic aspartyl protease family protein (.1) AT3G25700 125 / 2e-31 Eukaryotic aspartyl protease family protein (.1.2) AT3G54400 123 / 7e-31 Eukaryotic aspartyl protease family protein (.1) AT3G61820 117 / 2e-28 Eukaryotic aspartyl protease family protein (.1) AT1G09750 110 / 2e-26 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000514 [exp] 710 / 0 AT2G39710 541 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10004713 [exp] 681 / 0 AT2G39710 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10040279 [exp] 641 / 0 AT2G39710 566 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024375 [exp] 515 / 0 AT5G02190 572 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010854 [exp] 278 / 2e-92 AT5G02190 294 / 4e-99 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010855 [exp] 224 / 3e-66 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10003999 [exp] 139 / 2e-36 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 122 / 2e-30 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002612 [exp] 120 / 1e-29 AT5G33340 393 / 5e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058000 [exp] 603 / 0 AT2G39710 607 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G201400 [exp] 587 / 0 AT2G39710 583 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087600 [exp] 522 / 0 AT5G02190 548 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.017G131800 [exp] 253 / 1e-79 AT1G66180 570 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.004G085000 [exp] 238 / 2e-73 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087550 [exp] 196 / 6e-61 AT5G02190 234 / 8e-76 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 147 / 3e-39 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 133 / 2e-34 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 128 / 2e-32 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 126 / 9e-32 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10002707 pacid=23180544 polypeptide=Lus10002707 locus=Lus10002707.g ID=Lus10002707.BGIv1.0 annot-version=v1.0 ATGGCGGCCTCTCCCTTTGATTTCCTTCTACTACTTCTCCTTCTACTAATCCAACAACAATCATCCCTCGCCTCTCCCAAATTCCAGGTCTTCTCTCTCA AAACAGAGTCCAACCTCCGCGTCCCCAATTCAAGGCTATTCGGCGCCCTCGCCGCCGATTCCAAAGCCGATAAGATGATGTTCCACCACAATATCTCCCT GACCGTCTCCCTAACCGTCGGCTCGCCTCCTCAACGCGTAACCATGGTAATGGACACCGGAAGCGAGCTCTCCTGGCTCCACTGCCGCAAAACCCCTGGC CTCAATTTGGTTTTCAATCCGCTAGCTTCCAAGTCCTACGCCAAGGTCCCCTGCGTTTCGCCCACTTGCCGCACCCGTACCCGGGATCTATCCATACCCG TTTCCTGCGACGCCTCCAAGCTCTGCCACGTCACCGTCTCCTACGCCGACGCCACTTCAATCGAAGGGAACCTCGCTTACGAGACGTTCCGAATCGGGTC CATGACCCGACCGGCTACCCTGTTCGGGTGTATGGACTCCGGTTTCAGCTCCAACTCCGAAGAGGACGCCAAATCCACGGGGTTAATGGGTATGAACCGA GGCTCGCTTTCGTTCGTTAACCAAATGGGATACCCCAAATTCTCCTACTGTATCTCCAGCTTGGACTCCTCGGGCGTTTTACTTCTAGGCGACGCGAGTT TCTCCGGGATGAAGCCGCTCAGGTACACTCCCATGGTCAAAATCAACAACCCTTACCCGTTGCCGTACTATGACCGGGTAGCGTACACGATCCAGCTGGA GGGTATAAAGGTAAACAACAAAGTTTTAACCATACCGAAATCGGTTTTCCAGCCAGACCATACGGGTGCGGGTCAAACCATGGTTGACTCGGGTACCCAG TTCACTTTCCTACTAGGCCCTGCCTACACAGTCCTTAGAACAGAATTCCTCTCCCAAACTAGGAGGATTTTGCGCGTTGTGAATGATCCCAACTACTTGT TTCAATCGGCGATGGATTTATGCTACTTAATCGAATCGAACAGGAAGGTTCCTCCGGTTGGGTTGCCGGTTGTGACGCTGATGGTCCAAGGAGCGGAGAT GAGTGTATCGGGTGAGAAGTTGTTGTACCGAGTACCCGGTGGAGCGCAGGGGAAAGATTCGGTATGGTGCTTCACATTTGGAAACTCGGATTTGCTAGGG ATCGAGGCGTTTGTGATCGGCCATCACCATCAGCAGAACATATGGATGGAGTACGATCTGGCTAGGTCACGAATTGGTATTGCGGAAGTCAAGTGTGACG ACGCTGGTCGACAGCTTGGTTTACAAAAATAA
AA sequence Show only first row Show all	>Lus10002707 pacid=23180544 polypeptide=Lus10002707 locus=Lus10002707.g ID=Lus10002707.BGIv1.0 annot-version=v1.0 MAASPFDFLLLLLLLLIQQQSSLASPKFQVFSLKTESNLRVPNSRLFGALAADSKADKMMFHHNISLTVSLTVGSPPQRVTMVMDTGSELSWLHCRKTPG LNLVFNPLASKSYAKVPCVSPTCRTRTRDLSIPVSCDASKLCHVTVSYADATSIEGNLAYETFRIGSMTRPATLFGCMDSGFSSNSEEDAKSTGLMGMNR GSLSFVNQMGYPKFSYCISSLDSSGVLLLGDASFSGMKPLRYTPMVKINNPYPLPYYDRVAYTIQLEGIKVNNKVLTIPKSVFQPDHTGAGQTMVDSGTQ FTFLLGPAYTVLRTEFLSQTRRILRVVNDPNYLFQSAMDLCYLIESNRKVPPVGLPVVTLMVQGAEMSVSGEKLLYRVPGGAQGKDSVWCFTFGNSDLLG IEAFVIGHHHQQNIWMEYDLARSRIGIAEVKCDDAGRQLGLQK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39710			Eukaryotic aspartyl protease f...		Lus10002707 [exp]	0	1
AT1G70420			Protein of unknown function (D...		Lus10042116 [exp]	14.0	0.8839
AT5G66120			3-dehydroquinate synthase, put...		Lus10028429 [exp]	16.9	0.8858
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	17.4	0.8553
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10026084 [exp]	24.6	0.8605
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036111 [exp]	25.5	0.8809
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029232 [exp]	26.5	0.8405
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10024958 [exp]	32.6	0.8669
AT2G21100			Disease resistance-responsive ...		Lus10025063 [exp]	33.7	0.8551
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	37.4	0.8681
AT5G60570			Galactose oxidase/kelch repeat...		Lus10037413 [exp]	38.4	0.8504

Compare expression of checked genes

Lus10002707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.