Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29200 914 / 0 APUM1 pumilio 1 (.1) AT2G29140 894 / 0 APUM3 pumilio 3 (.1) AT2G29190 885 / 0 APUM2 pumilio 2 (.1.2) AT3G10360 594 / 0 APUM4 pumilio 4 (.1) AT3G20250 472 / 7e-151 APUM5 pumilio 5 (.1) AT4G25880 428 / 2e-135 APUM6 pumilio 6 (.1.2.3) AT1G22240 178 / 1e-47 APUM8 pumilio 8 (.1) AT1G78160 178 / 1e-46 APUM7 pumilio 7 (.1) AT5G56510 168 / 1e-43 APUM12 pumilio 12 (.1) AT4G08840 150 / 5e-38 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040782 [exp] 953 / 0 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10016513 [exp] 945 / 0 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 799 / 0 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10000515 [exp] 793 / 0 AT2G29200 308 / 3e-94 pumilio 1 (.1) Lus10004976 [exp] 784 / 0 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10000516 [exp] 779 / 0 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 754 / 0 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 734 / 0 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10034808 [exp] 494 / 9e-159 AT3G20250 880 / 0.0 pumilio 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201100 [exp] 1256 / 0 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.008G058300 [exp] 1230 / 0 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.009G034900 [exp] 976 / 0 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.001G243400 [exp] 962 / 0 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.008G036500 [exp] 658 / 0 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 622 / 0 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G004300 [exp] 499 / 3e-161 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.006G165100 [exp] 477 / 1e-152 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G009900 [exp] 469 / 1e-149 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.003G222300 [exp] 196 / 3e-52 AT5G56510 497 / 4e-168 pumilio 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat CL0020 [flax] [poplar] PF07990 [flax] [poplar] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Lus10002708 pacid=23180543 polypeptide=Lus10002708 locus=Lus10002708.g ID=Lus10002708.BGIv1.0 annot-version=v1.0 ATGGTATCGGATACGTACCCGAACATTCTGCCCGACATCTCAATTCGACCAGTCCTCAAGAATGAGGAGTTGGGCAAATTGATTAGAGAACAGCGGCTGG CGGCGAGCGATAGGGAGGAAGAGCTCGACATTTACCGGAGTGGGTCTGCGCCTCCGACTGTAGAAGGCTCCTTGAACTCAATCGGAGGTCTGCTGGGGAA GAATGGAAAAGGCGGCTTCTTAAGCGAAGAAGAGTTAAGGTCTGATCCAGCATATGTTAATTACTACTATTCTAATGCTAACGTCAATCCGAGGTTGCCG CCTCCTCTTTTGTCCAAGGAGGACTGGAGATTCTCGCAGAGAATCAACGGTGCGACTTCCGTGGTTGGTGATCGAAGGAAAGTAAGTAGGGTAAGTGATA TCGACGGGAATAGGTCTCTATTTGCGATGCAGCCAGGGTTTGTCGGAGGAGGCAATGAAGAGAAGACAGGGAATGGAAGCGAGTGGGGAGGAGATGGGCT TATTGGTCTCCCTGGGTTAGGCCTTGGAAGTAGGCAAAGAAGTATAGCTGAGATGATTCAGGACGACTTGGGTCATTCGAATCCTGTTTCAAGGCATCCA TCACGTCCTGCTAGCCGCAACACATTTGATGATGATGTTGAAGCTTCTCAATCCCATTTTTCTCAGCTTCACGGGGTGACATCTCTGGATTCTGTGCACT CAAGCTCCAATCTGCTTGGTGTGCCAGCTGTCGGGTCATCATCTTCGCATAGCTATGCTTCTGCACTTGGTGCCTCTTTGTCCCGGAGCACTACACCTGA CCCCCAGCTGATATCTAGGGCTCCTAGTCCTCGTATTCCACCTGTTGGAGGAGCTAGAATCAATTCCTTTGATAAAAGAGATGTGAATGGCGGCTTAAGC TCATTTAATGGGGTCACATCGAACTTGGGTGAACGTGCTGACCTTGTTGCTGCTTTTTCTGGTTTGAATATGTCAAATGGTACGACAAGATCACAAACTC AGCCTGAGATTGATGATCACCATGACTTTTTTCATTTGCATGGGGACCAAAAACATACCAAGCAGCCGCCATATATAAACAAGTCAATGGGATCTGCCAA CTCATACCTGAAAGGGCCATCCACTCCACCTCTAAATGGCAGAGGAAGCTCTCCTAATTACCAACATATGGATCTCTTAAATTCCCCATTTGCAAGTTAT GGTGGTAGTGGGTATCCTGGAAGTCCTTCTTCTCCATCTATGATGGGAGGAGGTCAGCTGGGCAATGGGACTTTGCCACCTCTGTTTGAGAACGCTGCTG CAAGTGCTATGGGAGGACTGGGGTTAGATTCTAGAATGTGGGGTGGTTTAGATCCTAATCTATTAGCTGCTGCTGTAGATCTGCAGAACCTTGGTAGAGT TGGGAATCAGACTACTGGTAATTCCCTGCAGATGCCTCATGTGGATCCTCTTTATCTACAGTACCTAAGATCAAATGAATACGCTGCTGCACAGGTTGCT GCTCTCAGTGAACCAACTATGGACAGGGATTACCTCGGCAATTCATACATGGATCTGCTTCAAAAAGCTTATCTTGAATCTCTGCTTCCCTCTCCAAAAT CGCAATATGGTGCTCCCTATCTCAGCAAATCTGGCAGCTTGAATCACAATTACTATGGAAATCCTTCATATGGTCTTGGCATGTCCTATTCTGGAAACCC GTTAGGGGGAGGCCTGCTTCCAAATTCTCCAATTGGATCAGGTAGTCCTGGAAGACACAGTGAACCGAATTTGCGTTTTGCATCTGGATTGAGGAATCTG AGTGGAGGTGTTATGGGATCTTGGCACTCAGATGTAATTGGAAACTTTAATGAAGGCTTTCCATCATCTCTACTGGATGAGTTCAAAAGCAACAAGACTA AATGTTTTGAACTCTCAGAAATTGCTGGTCATGTTGTTGAGTTCAGTGCCGACCAGTATGGGAGTCGATTCATTCAACAGAAACTTGAAACAGCTACAAC AGAAGAAAGAGACATGGTTTTCAACGAGATTATGCCCCAAGCCCTTTCATTAATGACTGATGTGTTTGGTAATTATGTCATTCAGAAGTTTTTTGAGCAT GGATCTGCTCCTCAAATAAGAGAACTGGCTGAGCAGCTAACTGGTCATGTTCTGACCCTCAGCCTTCAAATGTATGGTTGTCGAGTAATCCAGAAGGCTA TTGAAGTAGTTCAGCTGGACCAGCAGACCCAAATGGTGAAAGAGCTTGATGGTCATATCATGCGATGTGTGCGTGACCAGAATGGAAATCATGTCATCCA AAAGTGTATTGAATGTGTACCTGAAGACGCTATACATTTCATTGTTTCTACATTTTATGATCAAGTTGTTACACTATCCACTCATCCCTATGGTTGCCGC GTAATTCAGAGAGTTTTGGAGCATTGTCATGATGCAAAAACCCAGCAATTAATGATGGACGAGATCTTACGTTCGGTTTGCATGTTGGCACAAGATCAGT ATGGGAATTATGTTGTACAGCATGTGCTGGAGCATGGTAAGCCAGATGAACGTGAAATCATAATAAAGAAACTGACCGGGCAGATAGTTCAGATGAGTCA GCAGAAGTTTGCTTCCAATGTTATAGAAAAGTGTTTGACATTTGGTACAGCTGCTGAACGCCAGGCGTTGGTTGATGAGATGCTTGGCACAACTGATGAG AATGAGCCTCTTCAGGCAATGATGAAGGATCAGTTTGCAAACTACGTTGTACAGAAAGTGCTGGAAACTTGCGATGACCAACAGCTAGAATTGGTCCTTA ACCGAATAAAGGTGCACTTAAATGCTCTGAAGAAGTATACTTACGGGAAGCATATAGTGGCACGTGTAGAGAAGCTTGTTGCAGCTGGAGAGAGGCGCAT CAGCATCCTTACGCTGCAACCTGCTGCTGTTGTTTAG
AA sequence Show only first row Show all	>Lus10002708 pacid=23180543 polypeptide=Lus10002708 locus=Lus10002708.g ID=Lus10002708.BGIv1.0 annot-version=v1.0 MVSDTYPNILPDISIRPVLKNEELGKLIREQRLAASDREEELDIYRSGSAPPTVEGSLNSIGGLLGKNGKGGFLSEEELRSDPAYVNYYYSNANVNPRLP PPLLSKEDWRFSQRINGATSVVGDRRKVSRVSDIDGNRSLFAMQPGFVGGGNEEKTGNGSEWGGDGLIGLPGLGLGSRQRSIAEMIQDDLGHSNPVSRHP SRPASRNTFDDDVEASQSHFSQLHGVTSLDSVHSSSNLLGVPAVGSSSSHSYASALGASLSRSTTPDPQLISRAPSPRIPPVGGARINSFDKRDVNGGLS SFNGVTSNLGERADLVAAFSGLNMSNGTTRSQTQPEIDDHHDFFHLHGDQKHTKQPPYINKSMGSANSYLKGPSTPPLNGRGSSPNYQHMDLLNSPFASY GGSGYPGSPSSPSMMGGGQLGNGTLPPLFENAAASAMGGLGLDSRMWGGLDPNLLAAAVDLQNLGRVGNQTTGNSLQMPHVDPLYLQYLRSNEYAAAQVA ALSEPTMDRDYLGNSYMDLLQKAYLESLLPSPKSQYGAPYLSKSGSLNHNYYGNPSYGLGMSYSGNPLGGGLLPNSPIGSGSPGRHSEPNLRFASGLRNL SGGVMGSWHSDVIGNFNEGFPSSLLDEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEERDMVFNEIMPQALSLMTDVFGNYVIQKFFEH GSAPQIRELAEQLTGHVLTLSLQMYGCRVIQKAIEVVQLDQQTQMVKELDGHIMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFYDQVVTLSTHPYGCR VIQRVLEHCHDAKTQQLMMDEILRSVCMLAQDQYGNYVVQHVLEHGKPDEREIIIKKLTGQIVQMSQQKFASNVIEKCLTFGTAAERQALVDEMLGTTDE NEPLQAMMKDQFANYVVQKVLETCDDQQLELVLNRIKVHLNALKKYTYGKHIVARVEKLVAAGERRISILTLQPAAVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29200		APUM1	pumilio 1 (.1)		Lus10002708 [exp]	0	1
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10015635 [exp]	1.0	0.8014
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	5.7	0.7930
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Lus10011468 [exp]	7.5	0.7883
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	10.6	0.8011
AT5G44090			Calcium-binding EF-hand family...		Lus10024917 [exp]	11.7	0.7323
AT5G53060			RNA-binding KH domain-containi...		Lus10022390 [exp]	12.2	0.7074
AT5G59830			unknown protein		Lus10025307 [exp]	18.3	0.7791
AT1G77680			Ribonuclease II/R family prote...		Lus10009879 [exp]	18.4	0.6939
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10028588 [exp]	20.0	0.7389
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10002288 [exp]	20.5	0.7406

Compare expression of checked genes

Lus10002708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.