Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14465 180 / 6e-55 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT2G35270 173 / 5e-52 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT4G17800 172 / 1e-51 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT3G55560 169 / 2e-50 AT-hook AHL15, AGF2 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) AT2G42940 164 / 5e-49 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT3G04570 165 / 9e-49 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT2G45430 162 / 2e-47 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G12050 159 / 3e-46 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G22810 159 / 3e-46 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G35390 149 / 7e-43 AT-hook AGF1 AT-hook protein of GA feedback 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000519 [exp] 364 / 1e-126 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10006577 [exp] 186 / 1e-56 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10020763 [exp] 172 / 6e-52 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10042551 [exp] 164 / 8e-49 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1) Lus10031460 [exp] 156 / 8e-47 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10022010 [exp] 155 / 2e-45 AT4G14465 198 / 7e-63 AT-hook motif nuclear-localized protein 20 (.1) Lus10031458 [exp] 145 / 2e-42 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10015862 [exp] 143 / 2e-40 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1) Lus10009301 [exp] 142 / 4e-40 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G058700 [exp] 228 / 5e-73 AT3G55560 192 / 5e-59 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.010G200100 [exp] 226 / 4e-72 AT3G55560 209 / 2e-65 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.010G074201 [exp] 193 / 8e-60 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.013G044500 [exp] 193 / 9e-60 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1) Potri.001G142800 [exp] 180 / 1e-54 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.003G091300 [exp] 177 / 2e-53 AT4G17800 315 / 4e-108 Predicted AT-hook DNA-binding family protein (.1) Potri.001G115200 [exp] 174 / 4e-52 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.005G202700 [exp] 172 / 5e-52 AT2G42940 305 / 3e-105 Predicted AT-hook DNA-binding family protein (.1) Potri.003G116900 [exp] 173 / 7e-52 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.002G149300 [exp] 173 / 8e-52 AT2G45430 226 / 1e-72 AT-hook motif nuclear-localized protein 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10002711 pacid=23180545 polypeptide=Lus10002711 locus=Lus10002711.g ID=Lus10002711.BGIv1.0 annot-version=v1.0 ATGGCTGATAATCGATGGTGGGCCGGGAATGTAGCCATGCGAGGAGTGGATCCAATCACTTCATCCCCACAATCTTCCTCCCCGATCCCTCCATCTCTCC ACCACCTCAGAAACCCTGACGAAGAGCCTCAAGACAGCAGCAGGGACAATCAAGATTCCGGCGGCGGCGGCGGAGGTACTGGAGGAGGAGGTGGAACCAC CTCCGCTAGGAGACCAAGAGGTCGACCGGCGGGATCGAAGAACAAGCCGAAACCGCCGATAGTTGTCACGAAGGAAAGCCCGAACTCCCTGTGCAGCCAC ATCCTGGAGGTCCCTTCTGGATGCGACGTCTCCGAGGGAATCGCTGGATTCGCCCAGCGCCGCCACTGTGGGGTGTCGATCATGAGCGGAAACGGCGTCG TCACCAACGTAACCCTGCGCCAGCCAGCTGCTCCGGGAGGGGTCATCTCTCTTCATGGAAGGTTCGAGATCCTTTCGCTGTCCGGTTCGTTCCTGCCGGC TCCTTCTCCACCCGGGGCGACCGGTTTGACCGTTTACCTAGCGGGCGGACCGGGGCAGGTGGTGGGCGGGAGGGTTGTGGGACCCCTGGTAGCGTCCGGG CCGGTTATGGTGATTGCGGCGACGTTTAGTAACGCCACGTATGAGAGGCTGCCGCTTGATCCGGATCAGGATGTGGGGCATGGGCCGGGCCCAGGCCCGG AAGTTATGCAATTAGAAGAAGCAGGTAATGATAACAATTATGGGAATGGGAACAATAATAACAATAACAATGATGGGAGTGGAGGGGAGAATTCAGGAGG CTCTAATTCTTCTCCGCAAGGGATGGCTGTTACTAGTGATCATAATCATCAGCATCAACAGCAGCATCATCATCCGGCAATCTACAATCTGCCGCCAAAT CTGCTGCCGAATGGGCAAATGCCTCATGAAGTTTTCTGGGGAGCTCCTCCTCGGCCACCATTTTGA
AA sequence Show only first row Show all	>Lus10002711 pacid=23180545 polypeptide=Lus10002711 locus=Lus10002711.g ID=Lus10002711.BGIv1.0 annot-version=v1.0 MADNRWWAGNVAMRGVDPITSSPQSSSPIPPSLHHLRNPDEEPQDSSRDNQDSGGGGGGTGGGGGTTSARRPRGRPAGSKNKPKPPIVVTKESPNSLCSH ILEVPSGCDVSEGIAGFAQRRHCGVSIMSGNGVVTNVTLRQPAAPGGVISLHGRFEILSLSGSFLPAPSPPGATGLTVYLAGGPGQVVGGRVVGPLVASG PVMVIAATFSNATYERLPLDPDQDVGHGPGPGPEVMQLEEAGNDNNYGNGNNNNNNNDGSGGENSGGSNSSPQGMAVTSDHNHQHQQQHHHPAIYNLPPN LLPNGQMPHEVFWGAPPRPPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Lus10002711 [exp]	0	1
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10030343 [exp]	4.5	0.8884
AT5G47550			Cystatin/monellin superfamily ...		Lus10010495 [exp]	5.8	0.8880
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10014801 [exp]	13.4	0.8857
AT2G17650			AMP-dependent synthetase and l...		Lus10028375 [exp]	17.2	0.8772
AT2G23290	MYB	ATMYB70	myb domain protein 70 (.1)		Lus10021762 [exp]	19.8	0.8271
AT2G39445			Phosphatidylinositol N-acetylg...		Lus10010489 [exp]	22.1	0.8775
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10039297 [exp]	29.3	0.8705
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	29.7	0.8809
AT1G11380			PLAC8 family protein (.1)		Lus10002586 [exp]	30.4	0.8816
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	31.1	0.8746

Compare expression of checked genes

Lus10002711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.