Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44920 269 / 3e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G12250 63 / 4e-12 Pentapeptide repeat-containing protein (.1.2) AT5G55000 59 / 2e-10 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000520 [exp] 329 / 3e-116 AT2G44920 286 / 6e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10024602 [exp] 58 / 5e-10 AT1G12250 354 / 1e-123 Pentapeptide repeat-containing protein (.1.2) Lus10032239 [exp] 58 / 5e-10 AT1G12250 357 / 9e-125 Pentapeptide repeat-containing protein (.1.2) Lus10020270 [exp] 52 / 1e-07 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10002622 [exp] 49 / 5e-07 AT5G55000 462 / 1e-165 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10007788 [exp] 42 / 0.0001 AT5G53490 301 / 2e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G200000 [exp] 286 / 4e-99 AT2G44920 256 / 4e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.008G058800 [exp] 284 / 3e-98 AT2G44920 253 / 1e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G112900 [exp] 64 / 4e-12 AT1G12250 363 / 1e-128 Pentapeptide repeat-containing protein (.1.2) Potri.013G062500 [exp] 50 / 3e-07 AT5G55000 413 / 2e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Potri.019G038400 [exp] 49 / 8e-07 AT5G55000 414 / 1e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Potri.012G018100 [exp] 42 / 0.0002 AT5G53490 318 / 1e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0505 [flax] [poplar] Pentapeptide PF00805 [flax] [poplar] Pentapeptide Pentapeptide repeats (8 copies)
Representative CDS sequence Show only first row Show all	>Lus10002712 pacid=23180557 polypeptide=Lus10002712 locus=Lus10002712.g ID=Lus10002712.BGIv1.0 annot-version=v1.0 ATGAATCTTCTTCTGAATGTCTCGCTCTGTACGGCTAAAACCCCACCAAAACCCTCACTTCCACTCCTTCCAAGCCCTCCTCAACCCCCACTTTCTCTTT CTTTGCCCCGTTCCCAGGTGTTACGAGACTTGGCTAAAACAAGCTTGCTTGCAGTGCTATCCGCCTCTGTCTTCCTCTCTGACCCTGCTCTCGCATACAA GGGAGGAGGTCCATACGGTTCTGAGGTGACCAGGGGCCAGGATCTGACTGGCAAGGACTTCAGTGGCAAGACTTTGATCAAGCAGGACTTTAAGACGTCA ATTCTAAGGCAAGCCAATTTCAAAGGTGCAAAGTTGCTCGGGGCTAGCTTCTTTGATGCTGATTTGACTGGAGCCGATCTTTCGAATGCAGACCTTAGAG GAGTAGATTTCTCCTTGGCCAATGTGACAAAGGTGAATTTGAGCAATGCGAACCTAGAAGGCGCTCTAACCACAGGCAATACTTCATTCAAGGGCTCAAA CATAGCAGGAGCAGATTTCACTGATGTGCCTCTACGGGAGGATCAGCGTGAATACCTTTGCAAAATTGCAGATGGGGTGAACCCAACTACTGGAAACGCG ACCCGTGAGACACTACTTTGTAACTAA
AA sequence Show only first row Show all	>Lus10002712 pacid=23180557 polypeptide=Lus10002712 locus=Lus10002712.g ID=Lus10002712.BGIv1.0 annot-version=v1.0 MNLLLNVSLCTAKTPPKPSLPLLPSPPQPPLSLSLPRSQVLRDLAKTSLLAVLSASVFLSDPALAYKGGGPYGSEVTRGQDLTGKDFSGKTLIKQDFKTS ILRQANFKGAKLLGASFFDADLTGADLSNADLRGVDFSLANVTKVNLSNANLEGALTTGNTSFKGSNIAGADFTDVPLREDQREYLCKIADGVNPTTGNA TRETLLCN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10002712 [exp]	0	1
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10020296 [exp]	2.4	0.9408
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10003849 [exp]	3.5	0.9518
AT2G42220			Rhodanese/Cell cycle control p...		Lus10021032 [exp]	6.3	0.9504
AT2G44920			Tetratricopeptide repeat (TPR)...		Lus10000520 [exp]	6.9	0.9432
					Lus10023773 [exp]	7.3	0.9305
					Lus10011047 [exp]	7.9	0.9294
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	10.1	0.9453
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Lus10035389 [exp]	11.5	0.9288
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Lus10002084 [exp]	11.8	0.9432
AT3G61080			Protein kinase superfamily pro...		Lus10041374 [exp]	14.4	0.9342

Compare expression of checked genes

Lus10002712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.