Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11420 423 / 2e-144 Protein of unknown function (DUF604) (.1) AT2G37730 419 / 1e-142 Protein of unknown function (DUF604) (.1) AT4G23490 294 / 6e-94 Protein of unknown function (DUF604) (.1) AT4G15240 285 / 8e-91 Protein of unknown function (DUF604) (.1) AT5G41460 286 / 9e-91 Protein of unknown function (DUF604) (.1) AT4G11350 284 / 2e-90 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT1G33250 261 / 7e-81 Protein of unknown function (DUF604) (.1) AT1G01570 256 / 5e-80 Protein of unknown function (DUF604) (.1) AT1G05280 254 / 4e-79 Protein of unknown function (DUF604) (.1) AT5G12460 248 / 4e-77 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030153 [exp] 532 / 0 AT2G37730 305 / 6e-101 Protein of unknown function (DUF604) (.1) Lus10024364 [exp] 305 / 6e-101 AT2G37730 405 / 1e-139 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 302 / 2e-97 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 294 / 1e-93 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 286 / 1e-91 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 283 / 1e-89 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 278 / 1e-87 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 274 / 6e-86 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10008293 [exp] 256 / 4e-79 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G199900 [exp] 498 / 5e-174 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 491 / 3e-171 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 424 / 5e-145 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 411 / 7e-140 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 298 / 4e-96 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 287 / 2e-91 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 286 / 8e-91 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 283 / 9e-90 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 283 / 2e-89 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 272 / 6e-86 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10002713 pacid=23180559 polypeptide=Lus10002713 locus=Lus10002713.g ID=Lus10002713.BGIv1.0 annot-version=v1.0 ATGAGTCACAATCGATTGCCGGCGACAACCACAACCAAGACTCACAAGCCGGGATTATCCCCAGACGAAAAGCCTTTTCAGTTAATCGCCGTGGTCGGGA GAATTCTCATCTTCCTATTCATCCTCTCCTTCATCTGCATCGGACTTTACACCGCCTTCTTCGACCCAATCACTGGCACCACAACCACCACCGCCACCAC CGCCTTGCTCCGCCTCCACTCTTCCCTCCCCCGTCGCACCGCCGCCCTCAACTACTCCGCGACAAACATCTCTCACGTCCTGTTCGCCCTCAGCGGCTCC AACACCACGTGGCGAGATCGTAGCCGCTTCAGCTCCATCTGGTGGACCCGCAACCAGACGCGAGGCTATGTTTGGCTTGAAGACGACGACGGGGGGACGG TAGCATCACCGGCGGTTCGGATCGCGCGGATAATCAGTGACAGCTTCGGGTTGAAGCTACCCGGGGTGAGGTGGTTCGTAATGGGGGACGACGACACCGT TTTCTTCCCCGAGAATTTGGTTTCGCTTTTGGGGAAATACGACCACAGGGAGATGTGGTACATCGGCGGGAATTCGGAGAGCGTGGAGCAGGACGTTATG CACTCATACGACATGGCGTTTGGTGGCGGAGGGTTCGCAATCAGCTACCCGCTTGCCCAGCGGTTAGTACAAGTCCTCGACGGTTGCCTTGAACGCTTTC ATTATTTCTACGGCTCCGATCAAAGGATCTGGGCTTGTATCACCGAGCTCGGTGTGGGCCTTACCCCTCAATCCGGCTTTCACCAGTTGGACATCAGAGG GAGCGCTTACGGGCTTTTAGCAGCGCACCCGTTGTCCCCTTTGATCTCTCTACACCATCTCGATTCATTGGAGCCTCTGTTTCCGGGCCAGGACCACATA ACCTCTGTTAAGTCCCTCTACAAGGCTTACCGGGTCGATCCACCCAGGATACTTCAGTCGGCCTATGGCTACGACCGCTACTTCAACTGGTCCGTATCCA TCTCTTGGGGCTACACTGTTCAGCTCTACCCTACCTTGGTCGCGGTCCACGACTTGCAAGTTCCGCTACAAACGTTCAAGACATGGAGGACTTTCAGCGA TGGGCCATTCACATTCAACACTCGACCCACAGGTCCTGATCCATGCTCCATACCCATTGTGTTCATGCTCGACAAGGTGGAGATGATCGGGACATGGGGC ACCTTGACGGTTTACAAGAGGATGAACCCTGCCGTGATGTGCAAGAGACCAGACTTCATGCGAGCTATGTCTGTGCGGAGGATCGCTGTCACATCCATCA AAATGGACCCGGATTACTGGTCCGGGGCGCCTAGAAGACAATGCTGTGAGATTGTGAATGGGGGAAGACCAAGGCGCGAGACGCTGCAGATTATTATTAG AATATGTGAGTCTAATGAAACAGTTAGTACTGCAGATTAG
AA sequence Show only first row Show all	>Lus10002713 pacid=23180559 polypeptide=Lus10002713 locus=Lus10002713.g ID=Lus10002713.BGIv1.0 annot-version=v1.0 MSHNRLPATTTTKTHKPGLSPDEKPFQLIAVVGRILIFLFILSFICIGLYTAFFDPITGTTTTTATTALLRLHSSLPRRTAALNYSATNISHVLFALSGS NTTWRDRSRFSSIWWTRNQTRGYVWLEDDDGGTVASPAVRIARIISDSFGLKLPGVRWFVMGDDDTVFFPENLVSLLGKYDHREMWYIGGNSESVEQDVM HSYDMAFGGGGFAISYPLAQRLVQVLDGCLERFHYFYGSDQRIWACITELGVGLTPQSGFHQLDIRGSAYGLLAAHPLSPLISLHHLDSLEPLFPGQDHI TSVKSLYKAYRVDPPRILQSAYGYDRYFNWSVSISWGYTVQLYPTLVAVHDLQVPLQTFKTWRTFSDGPFTFNTRPTGPDPCSIPIVFMLDKVEMIGTWG TLTVYKRMNPAVMCKRPDFMRAMSVRRIAVTSIKMDPDYWSGAPRRQCCEIVNGGRPRRETLQIIIRICESNETVSTAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11420			Protein of unknown function (D...		Lus10002713 [exp]	0	1
AT5G01920		STN8	State transition 8, Protein ki...		Lus10022730 [exp]	2.6	0.9458
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029513 [exp]	2.8	0.9341
AT3G55140			Pectin lyase-like superfamily ...		Lus10024439 [exp]	3.2	0.9314
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10020326 [exp]	4.2	0.9414
AT1G22850			SNARE associated Golgi protein...		Lus10041062 [exp]	5.1	0.9229
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	6.5	0.9412
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	6.9	0.9283
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10003640 [exp]	7.5	0.9223
AT3G25805			unknown protein		Lus10016741 [exp]	9.4	0.9245
AT5G01920		STN8	State transition 8, Protein ki...		Lus10014183 [exp]	9.9	0.9255

Compare expression of checked genes

Lus10002713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.