Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39920 181 / 5e-56 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) AT4G29260 57 / 1e-09 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 51 / 2e-07 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 50 / 3e-07 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 49 / 1e-06 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 48 / 2e-06 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 44 / 6e-05 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040231 [exp] 519 / 0 AT2G39920 200 / 1e-62 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) Lus10028259 [exp] 422 / 3e-150 AT2G39920 194 / 2e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) Lus10023731 [exp] 53 / 5e-08 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 50 / 3e-07 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011140 [exp] 49 / 1e-06 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 48 / 2e-06 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193500 [exp] 216 / 2e-69 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3) Potri.002G257700 [exp] 52 / 9e-08 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G152900 [exp] 49 / 8e-07 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002714 pacid=23158716 polypeptide=Lus10002714 locus=Lus10002714.g ID=Lus10002714.BGIv1.0 annot-version=v1.0 ATGAATAAATCATCATCTGCGGAAGAAGTAGAGAGATGCGTTGAATCATCTGCTGCTGCTGCTTCCTACGCACACCAGATGGAGAGGGAGTACTCTGCTG GAAGCCTCTCCACCGCTGAAGATTCCGAGAGGGGAAGCGGATACACGATGGAGTCAGGATTCTACATGACATCATTCGCAGCAACCATATTCATTGCTCT CCTCATAACAGTCGGAGTCTTGATGGTCAGCTTGCTCATTTTATTAACAGTCATGCTGCAAGCCTGTGAGAACAGAAACAACGGTGTCGTCGAGATGCAA ACAAAGCATAATGCTAATTACCACTACTGCAAGAGCTTTGCTATGCATGCGGAGCTCAACAACCTGCCTTCACTGGACTTCCCTCCAGCGTGCTGGGACG ATCTCGCTACTCGCCCCAACAAAGTCGTCGAGTATCAAACTGACCTGACGACCAATCTGAGGGTTGTTGAAGGATACTTCGATAAGGTCGCGCCTTCAGA AGATGAAAGAGATGTAGTGTTGATCGACGCAGACAGTGTTTTGATTTCTAGTCCTCATTTCAGCCATTCCTTGAGGTACAGACAAAACCATTCCCGACAA GCGTGTCTCGTTAGACTGTACAAGAAGCTTCAAAGTAGTGGATGGTTGTTGATTTTGGCATCCAGGAATCCAGAAATACAAAGAAATGCGACTGTGGAGC AACTCAATTCTGCAGGATACAGTGCCTGGTCATTTTTGGTTCTGAGGTAG
AA sequence Show only first row Show all	>Lus10002714 pacid=23158716 polypeptide=Lus10002714 locus=Lus10002714.g ID=Lus10002714.BGIv1.0 annot-version=v1.0 MNKSSSAEEVERCVESSAAAASYAHQMEREYSAGSLSTAEDSERGSGYTMESGFYMTSFAATIFIALLITVGVLMVSLLILLTVMLQACENRNNGVVEMQ TKHNANYHYCKSFAMHAELNNLPSLDFPPACWDDLATRPNKVVEYQTDLTTNLRVVEGYFDKVAPSEDERDVVLIDADSVLISSPHFSHSLRYRQNHSRQ ACLVRLYKKLQSSGWLLILASRNPEIQRNATVEQLNSAGYSAWSFLVLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	0	1
AT2G39920			HAD superfamily, subfamily III...		Lus10040231 [exp]	1.0	0.9469
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	4.2	0.8217
AT3G10360		APUM4	pumilio 4 (.1)		Lus10038706 [exp]	4.9	0.8013
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	5.3	0.8396
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	6.3	0.8266
AT5G39785			Protein of unknown function (D...		Lus10015368 [exp]	7.1	0.8257
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	7.5	0.7941
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	8.9	0.8139
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	9.9	0.8169
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10040071 [exp]	10.1	0.8304

Compare expression of checked genes

Lus10002714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.